RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 RBM28Q9NW13 759 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 BRPF3Q9ULD4 1205 aa18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 NAP1L2Q9ULW6 460 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-205ENST00000472524 EPOPA6NHQ4 379 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 RBAK-RBAKDNI3L0D1 243 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 HAS3O00219 553 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 NOP56O00567 594 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 ZBTB43O43298 467 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 FIBPO43427 364 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 PPFIA4O75335 1185 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 HOXD8P13378 290 aaPredicted RBP18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 ICAM3P32942 547 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 PCNX4Q63HM2 1172 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 CAGE1Q8TC20 777 aa18.07■□□□□ 0.48
CCDC88B-205ENST00000472524 KLF18A0A0U1RQI7 1052 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 GOLGA8AA7E2F4 631 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 GOLGA8BA8MQT2 603 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 SPATA31C2B4DYI2 1134 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 NEFLP07196 543 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 CPA1P15085 419 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 FGD1P98174 961 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 NEDD9Q14511 834 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 CYFIP1Q7L576 1253 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 AFAP1L1Q8TED9 768 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 DHX38Q92620 1227 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 SLC9A7Q96T83 725 aa18.06■□□□□ 0.48
CCDC88B-205ENST00000472524 REV3LO60673 3130 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 LGALS2P05162 132 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 ZNF200P98182 395 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 SP4Q02446 784 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 TFF2Q03403 129 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 GPNMBQ14956 572 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 WWC2Q6AWC2 1192 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 XRRA1Q6P2D8 792 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 METTL7BQ6UX53 244 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 NLRX1Q86UT6 975 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 HERC6Q8IVU3 1022 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 PHOSPHO2Q8TCD6 241 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 JAKMIP1Q96N16 626 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 UHRF1Q96T88 793 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 C16orf70Q9BSU1 422 aa18.05■□□□□ 0.48
CCDC88B-205ENST00000472524 SPDYE3A6NKU9 549 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 HMGB1P09429 215 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 NAPAP54920 295 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 TAP1Q03518 808 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 KRT40Q6A162 431 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 LRRC8DQ7L1W4 858 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 ARNTL2Q8WYA1 636 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 NECAB3Q96P71 396 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 PCDHA6Q9UN73 950 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 PCDHA8Q9Y5H6 950 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 SNX14Q9Y5W7 946 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 MTCH2Q9Y6C9 303 aa18.04■□□□□ 0.48
CCDC88B-205ENST00000472524 MICAL3Q7RTP6 2002 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 H3BRB1 525 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 CKBP12277 381 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 SELPP16109 830 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 HSPA4P34932 840 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 FUT2Q10981 343 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 PTK7Q13308 1070 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 HIC1Q14526 733 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 SKIV2LQ15477 1246 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 UTP14CQ5TAP6 766 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 Q6ZUG5 572 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 SPRED2Q7Z698 418 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 TMCO2Q7Z6W1 182 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 IL27Q8NEV9 243 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 WNT8BQ93098 351 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 GPR20Q99678 358 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 TSPYL2Q9H2G4 693 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 TUT1Q9H6E5 874 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 TELO2Q9Y4R8 837 aa18.03■□□□□ 0.48
CCDC88B-205ENST00000472524 BAIAP3O94812 1187 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 CDC27P30260 824 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 RBL2Q08999 1139 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 APOBRQ0VD83 1088 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 TYW1BQ6NUM6 668 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 BLOC1S2Q6QNY1 142 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 TRIM50Q86XT4 487 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 KCNB2Q92953 911 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 GPRASP2Q96D09 838 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 EHMT1Q9H9B1 1298 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 FAM217BQ9NTX9 383 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 PKD2L1Q9P0L9 805 aa18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 V9GY48 417 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-205ENST00000472524 C17orf102A2RUQ5 167 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 LCHNA4D1U4 455 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 GTPBP6O43824 516 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 NBNO60934 754 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 REC8O95072 547 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 SMIM10L2AP0DMW4 78 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 SMIM10L2BP0DMW5 78 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 BMP1P13497 986 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 POU3F3P20264 500 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 METAP2P50579 478 aaKnown RBP eCLIP18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 KCNQ1P51787 676 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 WDR5P61964 334 aaKnown RBP18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 TCTN1Q2MV58 587 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 PPP1R18Q6NYC8 613 aa18.01■□□□□ 0.47
CCDC88B-205ENST00000472524 BRF1Q92994 677 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms