RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SEMA3FQ13275 785 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 IKBKEQ14164 716 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 FAM117BQ6P1L5 589 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 USP17L6PQ6QN14 398 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 NFXL1Q6ZNB6 911 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 CYFIP1Q7L576 1253 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 SERINC5Q86VE9 423 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 SMARCC2Q8TAQ2 1214 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 INPP4AQ96PE3 977 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-207ENST00000467819 MAP3K14Q99558 947 aa24.31■■□□□ 1.48
COL9A3-207ENST00000467819 TUT1Q9H6E5 874 aaKnown RBP24.31■■□□□ 1.48
COL9A3-207ENST00000467819 STAM2O75886 525 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 SMIM10L2AP0DMW4 78 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 SMIM10L2BP0DMW5 78 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 ICAM3P32942 547 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 GRB10Q13322 594 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 CUL5Q93034 780 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 ATP6V0A1Q93050 837 aa24.3■■□□□ 1.48
COL9A3-207ENST00000467819 UHRF1Q96T88 793 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-207ENST00000467819 SEC63Q9UGP8 760 aaKnown RBP24.3■■□□□ 1.48
COL9A3-207ENST00000467819 FIBPO43427 364 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 EFCAB14O75071 495 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 LGR5O75473 907 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 PLEKHA8P1O95397 391 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 NEDD9Q14511 834 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 METTL7BQ6UX53 244 aa24.29■■□□□ 1.48
COL9A3-207ENST00000467819 BRWD1Q9NSI6 2320 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 CCDC69A6NI79 296 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 RSPH10B2B2RC85 870 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 SPATA31C2B4DYI2 1134 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 SH2B2O14492 632 aaPredicted RBP24.28■■□□□ 1.48
COL9A3-207ENST00000467819 TREHO43280 583 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 GJB5O95377 273 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 RSPH10BP0C881 870 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 RXRAP19793 462 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 MCM5P33992 734 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 SP4Q02446 784 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 COL9A3Q14050 684 aaPredicted RBP24.28■■□□□ 1.48
COL9A3-207ENST00000467819 TRIM50Q86XT4 487 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 CMTR1Q8N1G2 835 aaKnown RBP24.28■■□□□ 1.48
COL9A3-207ENST00000467819 GDPD5Q8WTR4 605 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 LSG1Q9H089 658 aaKnown RBP24.28■■□□□ 1.48
COL9A3-207ENST00000467819 MTUS1Q9ULD2 1270 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 EMSYQ7Z589 1322 aa24.28■■□□□ 1.48
COL9A3-207ENST00000467819 MEIS2O14770 477 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 PCNX4Q63HM2 1172 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 RAB11FIP4Q86YS3 637 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 SRBD1Q8N5C6 995 aaKnown RBP24.27■■□□□ 1.48
COL9A3-207ENST00000467819 RAD9AQ99638 391 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 GPR20Q99678 358 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 LZTS2Q9BRK4 669 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 MTA3Q9BTC8 594 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 USP26Q9BXU7 913 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 RNPEPQ9H4A4 650 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 TELO2Q9Y4R8 837 aa24.27■■□□□ 1.48
COL9A3-207ENST00000467819 SLC27A2O14975 620 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 LPXNO60711 386 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 CTSHP09668 335 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 SMARCA1P28370 1054 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 HOXC8P31273 242 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 GNAQP50148 359 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 KCNQ1P51787 676 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 UTP14CQ5TAP6 766 aaKnown RBP24.26■■□□□ 1.47
COL9A3-207ENST00000467819 LIN28BQ6ZN17 250 aaKnown RBP eCLIP24.26■■□□□ 1.47
COL9A3-207ENST00000467819 DBF4BQ8NFT6 615 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 TMEM87BQ96K49 555 aa24.26■■□□□ 1.47
COL9A3-207ENST00000467819 PIK3CDO00329 1044 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 AAK1Q2M2I8 961 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 MYOCDQ8IZQ8 938 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 TMTC2Q8N394 836 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 NECAB3Q96P71 396 aaPredicted RBP24.25■■□□□ 1.47
COL9A3-207ENST00000467819 ESYT1Q9BSJ8 1104 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 LRRC2Q9BYS8 371 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 SETD4Q9NVD3 440 aa24.25■■□□□ 1.47
COL9A3-207ENST00000467819 hCG_1642624A0A1W2PR95 340 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 LINC01553A4QN01 128 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 BMP1P13497 986 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 XRRA1Q6P2D8 792 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 NLRX1Q86UT6 975 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 TGS1Q96RS0 853 aaKnown RBP24.24■■□□□ 1.47
COL9A3-207ENST00000467819 ZNF215Q9UL58 517 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-207ENST00000467819 NLRC5Q86WI3 1866 aa24.24■■□□□ 1.47
COL9A3-207ENST00000467819 AMHP03971 560 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 CALM1P0DP23 149 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 CALM2P0DP24 149 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 CALM3P0DP25 149 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 GNAT1P11488 350 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 PLEKHG4Q58EX7 1191 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 CREB3L3Q68CJ9 461 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 CCDC82Q8N4S0 544 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 SENP7Q9BQF6 1050 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 PSTPIP2Q9H939 334 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 ANO2Q9NQ90 1003 aa24.23■■□□□ 1.47
COL9A3-207ENST00000467819 ERVK-21P61565 698 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 ARHGAP4P98171 946 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 UBE2SQ16763 222 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 OSBPL7Q9BZF2 842 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 SUGCTQ9HAC7 445 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 COG5Q9UP83 839 aa24.22■■□□□ 1.47
COL9A3-207ENST00000467819 SLC12A7Q9Y666 1083 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms