RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 SEZ6LQ9BYH1 1024 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 ZMYND12Q9H0C1 365 aa21.33■■□□□ 1.01
USP39-209ENST00000458268 ESYT2A0FGR8 921 aa21.32■■□□□ 1
USP39-209ENST00000458268 SOX1O00570 391 aaPredicted RBP21.32■■□□□ 1
USP39-209ENST00000458268 PFKFB2O60825 505 aa21.32■■□□□ 1
USP39-209ENST00000458268 ATP9AO75110 1047 aa21.32■■□□□ 1
USP39-209ENST00000458268 SUPT20HL2P0C7V6 817 aa21.32■■□□□ 1
USP39-209ENST00000458268 ACRP10323 421 aa21.32■■□□□ 1
USP39-209ENST00000458268 CSF2RAP15509 400 aa21.32■■□□□ 1
USP39-209ENST00000458268 CLK2P49760 499 aaKnown RBP21.32■■□□□ 1
USP39-209ENST00000458268 FOSBP53539 338 aa21.32■■□□□ 1
USP39-209ENST00000458268 EPHB4P54760 987 aa21.32■■□□□ 1
USP39-209ENST00000458268 ARHGAP4P98171 946 aa21.32■■□□□ 1
USP39-209ENST00000458268 PTGISQ16647 500 aa21.32■■□□□ 1
USP39-209ENST00000458268 MFSD5Q6N075 450 aa21.32■■□□□ 1
USP39-209ENST00000458268 NFRKBQ6P4R8 1299 aa21.32■■□□□ 1
USP39-209ENST00000458268 TRIM50Q86XT4 487 aa21.32■■□□□ 1
USP39-209ENST00000458268 BICD2Q8TD16 824 aa21.32■■□□□ 1
USP39-209ENST00000458268 MXRA8Q9BRK3 442 aa21.32■■□□□ 1
USP39-209ENST00000458268 NOC4LQ9BVI4 516 aaKnown RBP21.32■■□□□ 1
USP39-209ENST00000458268 JADE2Q9NQC1 790 aa21.32■■□□□ 1
USP39-209ENST00000458268 HDAC6Q9UBN7 1215 aa21.32■■□□□ 1
USP39-209ENST00000458268 TRIP12Q14669 1992 aaPredicted RBP21.31■■□□□ 1
USP39-209ENST00000458268 DDX39AO00148 427 aaKnown RBP21.31■■□□□ 1
USP39-209ENST00000458268 PPFIA4O75335 1185 aa21.31■■□□□ 1
USP39-209ENST00000458268 LGALS2P05162 132 aa21.31■■□□□ 1
USP39-209ENST00000458268 SREBF1P36956 1147 aa21.31■■□□□ 1
USP39-209ENST00000458268 GDF6Q6KF10 455 aaPredicted RBP21.31■■□□□ 1
USP39-209ENST00000458268 SCLYQ96I15 445 aa21.31■■□□□ 1
USP39-209ENST00000458268 SCN5AQ14524 2016 aa21.3■■□□□ 1
USP39-209ENST00000458268 F2P00734 622 aa21.3■■□□□ 1
USP39-209ENST00000458268 ARP10275 920 aa21.3■■□□□ 1
USP39-209ENST00000458268 KCNA2P16389 499 aa21.3■■□□□ 1
USP39-209ENST00000458268 PPIGQ13427 754 aaKnown RBP eCLIP21.3■■□□□ 16e-7■■■□□ 16
USP39-209ENST00000458268 ME3Q16798 604 aa21.3■■□□□ 1
USP39-209ENST00000458268 PLA2G4DQ86XP0 818 aa21.3■■□□□ 1
USP39-209ENST00000458268 GIMAP8Q8ND71 665 aaPredicted RBP21.3■■□□□ 1
USP39-209ENST00000458268 RNPC3Q96LT9 517 aaKnown RBP21.3■■□□□ 1
USP39-209ENST00000458268 GPR20Q99678 358 aa21.3■■□□□ 1
USP39-209ENST00000458268 C22orf23Q9BZE7 217 aa21.3■■□□□ 1
USP39-209ENST00000458268 KCNH7Q9NS40 1196 aa21.3■■□□□ 1
USP39-209ENST00000458268 PTPN11Q06124 597 aaPredicted RBP21.29■■□□□ 1
USP39-209ENST00000458268 CEP55Q53EZ4 464 aa21.29■■□□□ 1
USP39-209ENST00000458268 SENP7Q9BQF6 1050 aa21.29■■□□□ 1
USP39-209ENST00000458268 SDF4Q9BRK5 362 aa21.29■■□□□ 1
USP39-209ENST00000458268 KCNJ14Q9UNX9 436 aa21.29■■□□□ 1
USP39-209ENST00000458268 H3BRB1 525 aa21.28■■□□□ 1
USP39-209ENST00000458268 MARK3P27448 753 aa21.28■■□□□ 1
USP39-209ENST00000458268 TCF7P36402 384 aaPredicted RBP21.28■■□□□ 1
USP39-209ENST00000458268 ZNF200P98182 395 aaPredicted RBP21.28■■□□□ 1
USP39-209ENST00000458268 DEFB128Q7Z7B8 93 aa21.28■■□□□ 1
USP39-209ENST00000458268 RETREG2Q8NC44 543 aa21.28■■□□□ 1
USP39-209ENST00000458268 C16orf70Q9BSU1 422 aa21.28■■□□□ 1
USP39-209ENST00000458268 WNT8AQ9H1J5 351 aa21.28■■□□□ 1
USP39-209ENST00000458268 TUT1Q9H6E5 874 aaKnown RBP21.28■■□□□ 1
USP39-209ENST00000458268 SH3GLB2Q9NR46 395 aa21.28■■□□□ 1
USP39-209ENST00000458268 ORC3Q9UBD5 711 aaPredicted RBP21.28■■□□□ 1
USP39-209ENST00000458268 GTF2IRD1Q9UHL9 959 aa21.28■■□□□ 1
USP39-209ENST00000458268 KAT6AQ92794 2004 aa21.28■■□□□ 1
USP39-209ENST00000458268 MCTP2Q6DN12 878 aa21.27■■□□□ 1
USP39-209ENST00000458268 GLG1Q92896 1179 aa21.27■■□□□ 1
USP39-209ENST00000458268 GTF3C6Q969F1 213 aa21.27■■□□□ 1
USP39-209ENST00000458268 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.27■■□□□ 13e-12■■□□□ 13.5
USP39-209ENST00000458268 UPF2Q9HAU5 1272 aaKnown RBP21.27■■□□□ 1
USP39-209ENST00000458268 JPH1Q9HDC5 661 aaPredicted RBP21.27■■□□□ 1
USP39-209ENST00000458268 GJB4Q9NTQ9 266 aa21.27■■□□□ 1
USP39-209ENST00000458268 SLC9A2Q9UBY0 812 aa21.27■■□□□ 1
USP39-209ENST00000458268 ZNF215Q9UL58 517 aaPredicted RBP21.27■■□□□ 1
USP39-209ENST00000458268 PCDHA4Q9UN74 947 aa21.27■■□□□ 1
USP39-209ENST00000458268 TANC1Q9C0D5 1861 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 FAM86B1E9PN63 330 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 HAS3O00219 553 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 FAM86B2P0C5J1 330 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 SMIM10L2AP0DMW4 78 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 SMIM10L2BP0DMW5 78 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 HOXD8P13378 290 aaPredicted RBP21.26■□□□□ 0.99
USP39-209ENST00000458268 PRR16Q569H4 304 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 TEX2Q8IWB9 1127 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 BLIDQ8IZY5 108 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 CCDC155Q8N6L0 562 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 AGO4Q9HCK5 861 aaKnown RBP21.26■□□□□ 0.99
USP39-209ENST00000458268 TCEAL9Q9UHQ7 104 aa21.26■□□□□ 0.99
USP39-209ENST00000458268 C17orf102A2RUQ5 167 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 MAFGO15525 162 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 CTDNEP1O95476 244 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 XBP1P17861 261 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 BFSP2Q13515 415 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 ZNF365Q70YC5 407 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 SEPT1Q8WYJ6 367 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 IL17RAQ96F46 866 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 IL23AQ9NPF7 189 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 STK36Q9NRP7 1315 aa21.25■□□□□ 0.99
USP39-209ENST00000458268 RANBP2P49792 3224 aaKnown RBP21.25■□□□□ 0.99
USP39-209ENST00000458268 GSTTP1A0A1W2PQM5 241 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 MEIS1O00470 390 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 JAK2O60674 1132 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 ITGB3BPQ13352 177 aaPredicted RBP21.24■□□□□ 0.99
USP39-209ENST00000458268 LRIT3Q3SXY7 679 aa21.24■□□□□ 0.99
USP39-209ENST00000458268 PSRC1Q6PGN9 363 aaPredicted RBP21.24■□□□□ 0.99
USP39-209ENST00000458268 OTOP2Q7RTS6 562 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms