RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 STXBP5LQ9Y2K9 1186 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 UBIAD1Q9Y5Z9 338 aa24.32■■□□□ 1.48
HMGB3-205ENST00000455596 TMEM265A0A087WTH1 108 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 H3BRB1 525 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 FOSP01100 380 aaPredicted RBP24.31■■□□□ 1.48
HMGB3-205ENST00000455596 LGALS2P05162 132 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 ITGB5P18084 799 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 PFKFB3Q16875 520 aaPredicted RBP24.31■■□□□ 1.48
HMGB3-205ENST00000455596 GPR20Q99678 358 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 SEMA6BQ9H3T3 888 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 TUT1Q9H6E5 874 aaKnown RBP24.31■■□□□ 1.48
HMGB3-205ENST00000455596 ZSWIM6Q9HCJ5 1215 aa24.31■■□□□ 1.48
HMGB3-205ENST00000455596 SCG2P13521 617 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 DNAJB2P25686 324 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 MTMR1Q13613 665 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 TET1Q8NFU7 2136 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 AFAP1L1Q8TED9 768 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 VWCEQ96DN2 955 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 GUCD1Q96NT3 240 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 CXXC1Q9P0U4 656 aaPredicted RBP24.3■■□□□ 1.48
HMGB3-205ENST00000455596 CYP46A1Q9Y6A2 500 aa24.3■■□□□ 1.48
HMGB3-205ENST00000455596 MAFGO15525 162 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 EVCP57679 992 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 PTK7Q13308 1070 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 AP3B2Q13367 1082 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 DHX38Q92620 1227 aaKnown RBP24.29■■□□□ 1.48
HMGB3-205ENST00000455596 TM6SF1Q9BZW5 370 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 TTYH1Q9H313 450 aaPredicted RBP24.29■■□□□ 1.48
HMGB3-205ENST00000455596 JADE2Q9NQC1 790 aa24.29■■□□□ 1.48
HMGB3-205ENST00000455596 GRXCR1A8MXD5 290 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 PRPF3O43395 683 aaKnown RBP24.28■■□□□ 1.48
HMGB3-205ENST00000455596 ATP9AO75110 1047 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 ACTN1P12814 892 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 KCNA2P16389 499 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 CLK2P49760 499 aaKnown RBP24.28■■□□□ 1.48
HMGB3-205ENST00000455596 AKAP17AQ02040 695 aaKnown RBP24.28■■□□□ 1.48
HMGB3-205ENST00000455596 SP4Q02446 784 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 RBL2Q08999 1139 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 PGBD1Q96JS3 809 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 ANO3Q9BYT9 981 aa24.28■■□□□ 1.48
HMGB3-205ENST00000455596 ZBBXA8MT70 800 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 SELPP16109 830 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 PDIA3P30101 505 aaKnown RBP24.27■■□□□ 1.48
HMGB3-205ENST00000455596 TOB2Q14106 344 aaPredicted RBP24.27■■□□□ 1.48
HMGB3-205ENST00000455596 LRRC8DQ7L1W4 858 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 CCDC12Q8WUD4 166 aaPredicted RBP24.27■■□□□ 1.48
HMGB3-205ENST00000455596 TIFAQ96CG3 184 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 MXRA8Q9BRK3 442 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 PBX4Q9BYU1 374 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 FTOQ9C0B1 505 aaKnown RBP eCLIP24.27■■□□□ 1.48
HMGB3-205ENST00000455596 TMEM260Q9NX78 707 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 ZNF215Q9UL58 517 aaPredicted RBP24.27■■□□□ 1.48
HMGB3-205ENST00000455596 SLC4A7Q9Y6M7 1214 aa24.27■■□□□ 1.48
HMGB3-205ENST00000455596 PTPRSQ13332 1948 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 ESYT2A0FGR8 921 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 C17orf102A2RUQ5 167 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 PARNO95453 639 aaKnown RBP24.26■■□□□ 1.47
HMGB3-205ENST00000455596 SMIM10L2AP0DMW4 78 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 SMIM10L2BP0DMW5 78 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 CKBP12277 381 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 CCT2P78371 535 aaKnown RBP24.26■■□□□ 1.47
HMGB3-205ENST00000455596 ZNF200P98182 395 aaPredicted RBP24.26■■□□□ 1.47
HMGB3-205ENST00000455596 UTP14CQ5TAP6 766 aaKnown RBP24.26■■□□□ 1.47
HMGB3-205ENST00000455596 PHKBQ93100 1093 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 RNF26Q9BY78 433 aaPredicted RBP24.26■■□□□ 1.47
HMGB3-205ENST00000455596 PKD2L1Q9P0L9 805 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 TELO2Q9Y4R8 837 aa24.26■■□□□ 1.47
HMGB3-205ENST00000455596 TCF7P36402 384 aaPredicted RBP24.25■■□□□ 1.47
HMGB3-205ENST00000455596 PBX2P40425 430 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 HIC1Q14526 733 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 RAB30Q15771 203 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 NTRK3Q16288 839 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 PKN1Q16512 942 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 CDX2Q99626 313 aaPredicted RBP24.25■■□□□ 1.47
HMGB3-205ENST00000455596 UPF3BQ9BZI7 483 aaKnown RBP24.25■■□□□ 1.47
HMGB3-205ENST00000455596 ZMYND12Q9H0C1 365 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 C6orf50Q9HD87 102 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 MSRAQ9UJ68 235 aa24.25■■□□□ 1.47
HMGB3-205ENST00000455596 IFNAR1P17181 557 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 HOXC8P31273 242 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 SREBF1P36956 1147 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 TRIM50Q86XT4 487 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 SEPT1Q8WYJ6 367 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 ATP6V0A1Q93050 837 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 SLC26A6Q9BXS9 759 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 RNPEPQ9H4A4 650 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 ZNF576Q9H609 170 aa24.24■■□□□ 1.47
HMGB3-205ENST00000455596 NCOA5Q9HCD5 579 aaKnown RBP24.24■■□□□ 1.47
HMGB3-205ENST00000455596 GNAT1P11488 350 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 TRIM71Q2Q1W2 868 aaKnown RBP24.23■■□□□ 1.47
HMGB3-205ENST00000455596 JAKMIP3Q5VZ66 844 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 MCTP2Q6DN12 878 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 SERINC5Q86VE9 423 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 WNT8BQ93098 351 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 ZNF274Q96GC6 653 aaPredicted RBP24.23■■□□□ 1.47
HMGB3-205ENST00000455596 KCNH7Q9NS40 1196 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 PDRG1Q9NUG6 133 aa24.23■■□□□ 1.47
HMGB3-205ENST00000455596 GSTTP1A0A1W2PQM5 241 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 GNA11P29992 359 aa24.22■■□□□ 1.47
HMGB3-205ENST00000455596 ZNF76P36508 570 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms