RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 XRRA1Q6P2D8 792 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 PLA2G4DQ86XP0 818 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 CHAMP1Q96JM3 812 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 MXRA8Q9BRK3 442 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 WDR11Q9BZH6 1224 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 DDX25Q9UHL0 483 aaKnown RBP19.52■□□□□ 0.72
LIME1-202ENST00000444951 PCDHB6Q9Y5E3 794 aa19.52■□□□□ 0.72
LIME1-202ENST00000444951 LRRC37A2A6NM11 1700 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 LOC102724159A0A0B4J2E5 919 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 ITGB5P18084 799 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 PWP2Q15269 919 aaKnown RBP19.51■□□□□ 0.71
LIME1-202ENST00000444951 CEP55Q53EZ4 464 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 RILPL1Q5EBL4 403 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 CCSAPQ6IQ19 270 aaPredicted RBP19.51■□□□□ 0.71
LIME1-202ENST00000444951 NLRX1Q86UT6 975 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 MSL3Q8N5Y2 521 aaKnown RBP19.51■□□□□ 0.71
LIME1-202ENST00000444951 KLHDC9Q8NEP7 349 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 MORC4Q8TE76 937 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 FAM161BQ96MY7 647 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 GUCD1Q96NT3 240 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 FTOQ9C0B1 505 aaKnown RBP eCLIP19.51■□□□□ 0.71
LIME1-202ENST00000444951 PDGFCQ9NRA1 345 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 TFIP11Q9UBB9 837 aaKnown RBP19.51■□□□□ 0.71
LIME1-202ENST00000444951 FAM184BQ9ULE4 1060 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 STXBP5LQ9Y2K9 1186 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 UBIAD1Q9Y5Z9 338 aa19.51■□□□□ 0.71
LIME1-202ENST00000444951 SLC37A4O43826 429 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 MARCH6O60337 910 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 SORBS3O60504 671 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 PQBP1O60828 265 aaKnown RBP19.5■□□□□ 0.71
LIME1-202ENST00000444951 ARP10275 920 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 NCLP19338 710 aaKnown RBP19.5■□□□□ 0.71
LIME1-202ENST00000444951 TRAPPC10P48553 1259 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 EPHB4P54760 987 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 ACVR2BQ13705 512 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 NAP1L4Q99733 375 aaKnown RBP19.5■□□□□ 0.71
LIME1-202ENST00000444951 KATNBL1Q9H079 304 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 ABHD16BQ9H3Z7 469 aa19.5■□□□□ 0.71
LIME1-202ENST00000444951 STAM2O75886 525 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 RGS20O76081 388 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 CLTBP09497 229 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 CIITAP33076 1130 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 ACLYP53396 1101 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 MTMR1Q13613 665 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 KCNA10Q16322 511 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 GNPTABQ3T906 1256 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 POTEDQ86YR6 584 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 ZNF396Q96N95 335 aaPredicted RBP19.49■□□□□ 0.71
LIME1-202ENST00000444951 INPP4AQ96PE3 977 aaPredicted RBP19.49■□□□□ 0.71
LIME1-202ENST00000444951 VTA1Q9NP79 307 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 JADE2Q9NQC1 790 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 CLIC4Q9Y696 253 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 MRVI1Q9Y6F6 885 aa19.49■□□□□ 0.71
LIME1-202ENST00000444951 IGLV3-22A0A075B6J6 115 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 MEIS1O00470 390 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 NEMFO60524 1076 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 GCFC2P16383 781 aaKnown RBP19.48■□□□□ 0.71
LIME1-202ENST00000444951 PTGS1P23219 599 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 DNM1Q05193 864 aaKnown RBP19.48■□□□□ 0.71
LIME1-202ENST00000444951 CCDC144BQ3MJ40 725 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 PPP4R3AQ6IN85 833 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 GJA10Q969M2 543 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 TSEN34Q9BSV6 310 aaKnown RBP19.48■□□□□ 0.71
LIME1-202ENST00000444951 ATP6V1DQ9Y5K8 247 aa19.48■□□□□ 0.71
LIME1-202ENST00000444951 CYP3A7-CYP3A51PA0A087WV96 503 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 KIAA0355O15063 1070 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 DUSP11O75319 330 aaKnown RBP19.47■□□□□ 0.71
LIME1-202ENST00000444951 CYP3A7P24462 503 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 FAAP100Q0VG06 881 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 SF3A1Q15459 793 aaKnown RBP19.47■□□□□ 0.71
LIME1-202ENST00000444951 CALCRLQ16602 461 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 TMEM63BQ5T3F8 832 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 FAM109BQ6ICB4 259 aaPredicted RBP19.47■□□□□ 0.71
LIME1-202ENST00000444951 TAPT1Q6NXT6 567 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 MOXD1Q6UVY6 613 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 GPRASP2Q96D09 838 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 USP28Q96RU2 1077 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 STARD7Q9NQZ5 370 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.47■□□□□ 0.71
LIME1-202ENST00000444951 KCNH7Q9NS40 1196 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 PRUNE2Q8WUY3 3088 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 MYH15Q9Y2K3 1946 aa19.47■□□□□ 0.71
LIME1-202ENST00000444951 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.46■□□□□ 0.71
LIME1-202ENST00000444951 SPATA31C2B4DYI2 1134 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 CTAGE5O15320 804 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 FIBPO43427 364 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 TXNP10599 105 aaKnown RBP19.46■□□□□ 0.71
LIME1-202ENST00000444951 SETQ01105 290 aaPredicted RBP19.46■□□□□ 0.71
LIME1-202ENST00000444951 SEMA3FQ13275 785 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 LY6KQ17RY6 165 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 Q4G0T1 1027 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 NIPA1Q7RTP0 329 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 SCFD2Q8WU76 684 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 LENG9Q96B70 501 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 MBOAT7Q96N66 472 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 ZNF577Q9BSK1 485 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 UPF3AQ9H1J1 476 aaKnown RBP19.46■□□□□ 0.71
LIME1-202ENST00000444951 TMEM60Q9H2L4 133 aa19.46■□□□□ 0.71
LIME1-202ENST00000444951 AGO4Q9HCK5 861 aaKnown RBP19.46■□□□□ 0.71
LIME1-202ENST00000444951 CUL9Q8IWT3 2517 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms