RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 H3BRB1 525 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 TREHO43280 583 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 GGPS1O95749 300 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 CFBP00751 764 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 UBA1P22314 1058 aaKnown RBP16.78■□□□□ 0.28
HMGN1-208ENST00000443046 IRS1P35568 1242 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 PGM5Q15124 567 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 SMAD2Q15796 467 aaKnown RBP16.78■□□□□ 0.28
HMGN1-208ENST00000443046 HFE2Q6ZVN8 426 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 MTMR8Q96EF0 704 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 RNPEPQ9H4A4 650 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 TUT1Q9H6E5 874 aaKnown RBP16.78■□□□□ 0.28
HMGN1-208ENST00000443046 KAT14Q9H8E8 782 aa16.78■□□□□ 0.28
HMGN1-208ENST00000443046 PPP1R11O60927 126 aaPredicted RBP16.77■□□□□ 0.28
HMGN1-208ENST00000443046 KDM4AO75164 1064 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 SMIM10L2AP0DMW4 78 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 SMIM10L2BP0DMW5 78 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 HERC4Q5GLZ8 1057 aaPredicted RBP16.77■□□□□ 0.28
HMGN1-208ENST00000443046 FAM26DQ5JW98 314 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 SAMD3Q8N6K7 520 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 ENAHQ8N8S7 591 aaPredicted RBP16.77■□□□□ 0.28
HMGN1-208ENST00000443046 IL31RAQ8NI17 732 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 GPKOWQ92917 476 aaPredicted RBP eCLIP16.77■□□□□ 0.282e-6■■■■□ 20.4
HMGN1-208ENST00000443046 AMNQ9BXJ7 453 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 UPF3BQ9BZI7 483 aaKnown RBP16.77■□□□□ 0.28
HMGN1-208ENST00000443046 BCAS3Q9H6U6 928 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 CLDND1Q9NY35 253 aa16.77■□□□□ 0.28
HMGN1-208ENST00000443046 MYO15AQ9UKN7 3530 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 ZNF213O14771 459 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 UPP2O95045 317 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 RB1P06400 928 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 PARP1P09874 1014 aaKnown RBP16.76■□□□□ 0.27
HMGN1-208ENST00000443046 MYCLP12524 364 aaPredicted RBP16.76■□□□□ 0.27
HMGN1-208ENST00000443046 ADAM17P78536 824 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 ANKRD45Q5TZF3 282 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 RPAINQ86UA6 219 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 IQCA1Q86XH1 822 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 APBB2Q92870 758 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 ZSCAN10Q96SZ4 725 aaPredicted RBP16.76■□□□□ 0.27
HMGN1-208ENST00000443046 RC3H2Q9HBD1 1191 aaKnown RBP16.76■□□□□ 0.27
HMGN1-208ENST00000443046 VAT1LQ9HCJ6 419 aa16.76■□□□□ 0.27
HMGN1-208ENST00000443046 SORBS3O60504 671 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 LGALS2P05162 132 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 BMPR1AP36894 532 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 DLX2Q07687 328 aaPredicted RBP16.75■□□□□ 0.27
HMGN1-208ENST00000443046 HYAL1Q12794 435 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 STAG2Q8N3U4 1231 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 IL17RAQ96F46 866 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 IFIH1Q9BYX4 1025 aaKnown RBP16.75■□□□□ 0.27
HMGN1-208ENST00000443046 LMAN2LQ9H0V9 348 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 ZSWIM5Q9P217 1185 aa16.75■□□□□ 0.27
HMGN1-208ENST00000443046 MBTPS2O43462 519 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 EP400NLQ6ZTU2 488 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 CLP1Q92989 425 aaKnown RBP16.74■□□□□ 0.27
HMGN1-208ENST00000443046 MFSD14AQ96MC6 490 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 USP26Q9BXU7 913 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 MLXIPQ9HAP2 919 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 TTC3P53804 2025 aa16.74■□□□□ 0.27
HMGN1-208ENST00000443046 ZBTB5O15062 677 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 GRM6O15303 877 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 DHX16O60231 1041 aaKnown RBP16.73■□□□□ 0.27
HMGN1-208ENST00000443046 CTSHP09668 335 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 HOXA13P31271 388 aaPredicted RBP16.73■□□□□ 0.27
HMGN1-208ENST00000443046 ICAM3P32942 547 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 MFAP1P55081 439 aaKnown RBP16.73■□□□□ 0.27
HMGN1-208ENST00000443046 BMP8AQ7Z5Y6 402 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 FIBCD1Q8N539 461 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 POP1Q99575 1024 aaKnown RBP16.73■□□□□ 0.27
HMGN1-208ENST00000443046 C11orf84Q9BUA3 381 aaPredicted RBP16.73■□□□□ 0.27
HMGN1-208ENST00000443046 EHMT1Q9H9B1 1298 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 SETD4Q9NVD3 440 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 MUTYHQ9UIF7 546 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 RWDD3Q9Y3V2 267 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 PCDHA1Q9Y5I3 950 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 VPS13AQ96RL7 3174 aa16.73■□□□□ 0.27
HMGN1-208ENST00000443046 DMDP11532 3685 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 B4E1Z4 1266 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 KLRF2D3W0D1 207 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 CHRNA1P02708 482 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 GNAT1P11488 350 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 SDSP20132 328 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 CTNNB1P35222 781 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 CAMK1Q14012 370 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 SLC35G1Q2M3R5 365 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 RNF135Q8IUD6 432 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 EDAQ92838 391 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 ZNF689Q96CS4 500 aaPredicted RBP16.72■□□□□ 0.27
HMGN1-208ENST00000443046 ZFP91Q96JP5 570 aaPredicted RBP16.72■□□□□ 0.27
HMGN1-208ENST00000443046 GPR20Q99678 358 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 MAD2L2Q9UI95 211 aa16.72■□□□□ 0.27
HMGN1-208ENST00000443046 FRMPD4Q14CM0 1322 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 DOCK5Q9H7D0 1870 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 ZDBF2Q9HCK1 2354 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 KAT6AQ92794 2004 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 PALM3A6NDB9 673 aaPredicted RBP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 SPATA31C2B4DYI2 1134 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 TBX10O75333 385 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 CCND2P30279 289 aa16.71■□□□□ 0.27
HMGN1-208ENST00000443046 GTF2F1P35269 517 aaKnown RBP eCLIP16.71■□□□□ 0.27
HMGN1-208ENST00000443046 MRPS9P82933 396 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms