RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 LCMT1Q9UIC8 334 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 FAM184BQ9ULE4 1060 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 HYOU1Q9Y4L1 999 aa18.15■□□□□ 0.5
CLCNKA-203ENST00000439316 POTEMA6NI47 508 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 AGPSO00116 658 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 AKR1B10O60218 316 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 TCP1P17987 556 aaKnown RBP18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 MAPK8IP2Q13387 824 aaPredicted RBP18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 ASPRV1Q53RT3 343 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 HHIPL2Q6UWX4 724 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 LRRC31Q6UY01 552 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 ARHGAP27Q6ZUM4 889 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 RRAGAQ7L523 313 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 LARGE2Q8N3Y3 721 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 SNX29Q8TEQ0 813 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 OSBPL9Q96SU4 736 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 NUDT12Q9BQG2 462 aa18.14■□□□□ 0.49
CLCNKA-203ENST00000439316 MYO1CO00159 1063 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 GGCXP38435 758 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 ZCWPW2Q504Y3 356 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 KRT79Q5XKE5 535 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 PPP1R18Q6NYC8 613 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 KCNK18Q7Z418 384 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 SPATA4Q8NEY3 305 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 DDX12PQ92771 950 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 TSG101Q99816 390 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 RRP15Q9Y3B9 282 aaKnown RBP18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 FRMPD2Q68DX3 1309 aaPredicted RBP18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 COL4A5P29400 1685 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 SSU72P8A0A1W2PR75 194 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 SNHG28P0DPA3 235 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 CRKP46108 304 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 COA7Q96BR5 231 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 DRC1Q96MC2 740 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 GDAP1L1Q96MZ0 367 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 CD2APQ9Y5K6 639 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 PSME4Q14997 1843 aa18.13■□□□□ 0.49
CLCNKA-203ENST00000439316 A0A0U1RQG5 324 aaPredicted RBP18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 MAGEA1P43355 309 aa18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 APOBEC3HQ6NTF7 200 aaKnown RBP18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 NFRKBQ6P4R8 1299 aa18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 FOXR1Q6PIV2 292 aa18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 RIN2Q8WYP3 895 aaPredicted RBP18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 USP40Q9NVE5 1235 aa18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 MTMR4Q9NYA4 1195 aa18.12■□□□□ 0.49
CLCNKA-203ENST00000439316 RBAK-RBAKDNI3L0D1 243 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 SEPT2Q15019 361 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 HGSNATQ68CP4 663 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 PPP4R3AQ6IN85 833 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 CCDC155Q8N6L0 562 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 GLIS3Q8NEA6 775 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 LRRC1Q9BTT6 524 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 SALL4Q9UJQ4 1053 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 PCDHAC2Q9Y5I4 1007 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 FER1L6Q2WGJ9 1857 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 IGKV6D-41A0A0C4DH26 115 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 ATP2B2Q01814 1243 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 KCNMA1Q12791 1236 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 COASYQ13057 564 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 PICALMQ13492 652 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 CDC42EP5Q6NZY7 148 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 MYOCDQ8IZQ8 938 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 HDAC7Q8WUI4 952 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 DNAJC19Q96DA6 116 aa18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 DMGDHQ9UI17 866 aaKnown RBP18.11■□□□□ 0.49
CLCNKA-203ENST00000439316 GOLGA6BA6NDN3 693 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 RAD17O75943 681 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 TNFRSF8P28908 595 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 CLK2P49760 499 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 RBM5P52756 815 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 LRRC41Q15345 812 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 ECM1Q16610 540 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 RNF10Q8N5U6 811 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 SYN2Q92777 582 aaPredicted RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 ZDHHC15Q96MV8 337 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 MRIQ9BWK5 157 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 CEP72Q9P209 647 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 COL4A3BPQ9Y5P4 624 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 MYH10P35580 1976 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 SHOX2O60902 331 aaPredicted RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 SLC1A4P43007 532 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 TNNI2P48788 182 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 GFPT1Q06210 699 aaPredicted RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 GABPAQ06546 454 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 HAUS3Q68CZ6 603 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 CACNA2D4Q7Z3S7 1137 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 LRRC47Q8N1G4 583 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 MTMR8Q96EF0 704 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 TLR10Q9BXR5 811 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 NUCKS1Q9H1E3 243 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 DDX4Q9NQI0 724 aaKnown RBP18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 BCS1LQ9Y276 419 aa18.1■□□□□ 0.49
CLCNKA-203ENST00000439316 HDLBPQ00341 1268 aaKnown RBP18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 FKBP3Q00688 224 aaKnown RBP18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 HYIQ5T013 277 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 CCDC181Q5TID7 509 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 KLHDC7AQ5VTJ3 777 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 SND1Q7KZF4 910 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 HAS1Q92839 578 aa18.09■□□□□ 0.49
CLCNKA-203ENST00000439316 CEP63Q96MT8 703 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms