RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 PCBP1Q15365 356 aaKnown RBP eCLIP5.9□□□□□ -1.46
USP40-204ENST00000427947 PKN3Q6P5Z2 889 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 KCTD1Q719H9 257 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 THNSL2Q86YJ6 484 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 C2orf69Q8N8R5 385 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 CHST14Q8NCH0 376 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 FBXO15Q8NCQ5 510 aaPredicted RBP5.9□□□□□ -1.46
USP40-204ENST00000427947 ARRDC4Q8NCT1 418 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 SH3RF2Q8TEC5 729 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 YIPF4Q9BSR8 244 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 SPC25Q9HBM1 224 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 CABP5Q9NP86 173 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 ASH2LQ9UBL3 628 aa5.9□□□□□ -1.46
USP40-204ENST00000427947 ANKRD62A6NC57 917 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 CBX4O00257 560 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 MAN2B1O00754 1011 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 DNAJC6O75061 913 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 PMLP29590 882 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 STAT3P40763 770 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 NCKAP1LP55160 1127 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 TUSC3Q13454 348 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 FIGNQ5HY92 759 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 ETV3LQ6ZN32 361 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.89□□□□□ -1.47
USP40-204ENST00000427947 RNF180Q86T96 592 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 AMIGO3Q86WK7 504 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 TRIM48Q8IWZ4 208 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 AHI1Q8N157 1196 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 UBR7Q8N806 425 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 CHAC2Q8WUX2 184 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 LEO1Q8WVC0 666 aaPredicted RBP5.89□□□□□ -1.47
USP40-204ENST00000427947 SGPP1Q9BX95 441 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 MTFR1LQ9H019 292 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 MBD1Q9UIS9 605 aaPredicted RBP5.89□□□□□ -1.47
USP40-204ENST00000427947 MAPRE3Q9UPY8 281 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 TELO2Q9Y4R8 837 aa5.89□□□□□ -1.47
USP40-204ENST00000427947 LOC100996750A0A140TA64 210 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 TEX51A0A1B0GUA7 166 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 TRAF5O00463 557 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 SEMA7AO75326 666 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 KRT37O76014 449 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 ASGR2P07307 311 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 CNGA1P29973 690 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 SOX5P35711 763 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 MECP2P51608 486 aaKnown RBP5.88□□□□□ -1.47
USP40-204ENST00000427947 GRIN1Q05586 938 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 SKOR2Q2VWA4 1001 aaPredicted RBP5.88□□□□□ -1.47
USP40-204ENST00000427947 CT47A1Q5JQC4 288 aaPredicted RBP5.88□□□□□ -1.47
USP40-204ENST00000427947 HHIPL2Q6UWX4 724 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 LDHDQ86WU2 507 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 ANKLE2Q86XL3 938 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 NLGN4XQ8N0W4 816 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 CLEC4DQ8WXI8 215 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 KRTAP4-6Q9BYQ5 205 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 TMX1Q9H3N1 280 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 CAAP1Q9H8G2 361 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 CNTD2Q9H8S5 307 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 IFT57Q9NWB7 429 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 RNF114Q9Y508 228 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 ATP23Q9Y6H3 246 aa5.88□□□□□ -1.47
USP40-204ENST00000427947 SLC12A8A0AV02 714 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 PTPDC1A2A3K4 754 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 ZNF891A8MT65 544 aaPredicted RBP5.87□□□□□ -1.47
USP40-204ENST00000427947 SCDO00767 359 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 NCAM1P13591 858 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 FBLN1P23142 703 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 MC3RP41968 323 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 STAT5AP42229 794 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 CDR1P51861 262 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 EPHB3P54753 998 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 IRF9Q00978 393 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 SEPT7Q16181 437 aaKnown RBP5.87□□□□□ -1.47
USP40-204ENST00000427947 CPZQ66K79 652 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 FSTL4Q6MZW2 842 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 MIB1Q86YT6 1006 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 FAM126BQ8IXS8 530 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 NXPE1Q8N323 547 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 KCNN1Q92952 543 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 DDX11Q96FC9 970 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 BOCQ9BWV1 1114 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP40-204ENST00000427947 RIC8BQ9NVN3 520 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 DTLQ9NZJ0 730 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 ZKSCAN5Q9Y2L8 839 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 PCDHA5Q9Y5H7 936 aa5.87□□□□□ -1.47
USP40-204ENST00000427947 PAX4O43316 350 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 GAS7O60861 476 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 HIP1RO75146 1068 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 F2P00734 622 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 VIL1P09327 827 aaKnown RBP5.86□□□□□ -1.47
USP40-204ENST00000427947 PFKLP17858 780 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 PTPN1P18031 435 aaKnown RBP5.86□□□□□ -1.47
USP40-204ENST00000427947 EPHA5P54756 1037 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 SART3Q15020 963 aaKnown RBP5.86□□□□□ -1.47
USP40-204ENST00000427947 TARBP2Q15633 366 aaKnown RBP5.86□□□□□ -1.47
USP40-204ENST00000427947 ARHGAP44Q17R89 818 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 BTBD8Q5XKL5 378 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 CD300LDQ6UXZ3 194 aa5.86□□□□□ -1.47
USP40-204ENST00000427947 SYDE1Q6ZW31 735 aaPredicted RBP5.86□□□□□ -1.47
USP40-204ENST00000427947 OTOP1Q7RTM1 612 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms