RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TRIM14Q14142 442 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 MCPH1Q8NEM0 835 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 IL17RAQ96F46 866 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 SPEF2Q9C093 1822 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 ROBO3Q96MS0 1386 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 EIF3JO75822 258 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 GNAT1P11488 350 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 DSG3P32926 999 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 LIG4P49917 911 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 SEMA3FQ13275 785 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 NELFCDQ8IXH7 590 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 KCTD17Q8N5Z5 321 aa9.4□□□□□ -0.9
SYNE1-211ENST00000413186 SRRTQ9BXP5 876 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 METTL14Q9HCE5 456 aaKnown RBP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.4□□□□□ -0.9
SYNE1-211ENST00000413186 LRRIQ4A6NIV6 560 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 EPHA7Q15375 998 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 ENOX2Q16206 610 aaKnown RBP9.4□□□□□ -0.91
SYNE1-211ENST00000413186 LUZP1Q86V48 1076 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 IQCDQ96DY2 449 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 AGBL1Q96MI9 1066 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.4□□□□□ -0.91
SYNE1-211ENST00000413186 IFNKQ9P0W0 207 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 ADAMTS7Q9UKP4 1686 aa9.4□□□□□ -0.91
SYNE1-211ENST00000413186 TDP2O95551 362 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 SKILP12757 684 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 MAPK4P31152 587 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 QARSP47897 775 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 SNW1Q13573 536 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 TCP11Q8WWU5 503 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 TAF4BQ92750 862 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 NUDT12Q9BQG2 462 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 CGNQ9P2M7 1197 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 FAM184BQ9ULE4 1060 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 ERCC5P28715 1186 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 GABPAQ06546 454 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 VGLL4Q14135 290 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 MOXD1Q6UVY6 613 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 DHTKD1Q96HY7 919 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PCDHA10Q9Y5I2 948 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PCDHAC2Q9Y5I4 1007 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 POTEDQ86YR6 584 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 NUP58Q9BVL2 599 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PARVGQ9HBI0 331 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PUF60Q9UHX1 559 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 LUC7L2Q9Y383 392 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 MYPNQ86TC9 1320 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 ERLIN2O94905 339 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 CASQ1P31415 396 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PSMC5P62195 406 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 RPS6P62753 249 aaKnown RBP9.39□□□□□ -0.91
SYNE1-211ENST00000413186 IGBP1P78318 339 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 PPP2R3AQ06190 1150 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 TRPC3Q13507 836 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 NTRK3Q16288 839 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 VWA3BQ502W6 1294 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 CNGA4Q8IV77 575 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 RAET1EQ8TD07 263 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 EPSTI1Q96J88 318 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 RIT2Q99578 217 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 TMEM206Q9H813 350 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 CBX8Q9HC52 389 aa9.39□□□□□ -0.91
SYNE1-211ENST00000413186 KIF28PB7ZC32 967 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 FCGRTP55899 365 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 HERVK_113P62684 666 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 MTERF2Q49AM1 385 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 SCFD2Q8WU76 684 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 KLRG1Q96E93 195 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 BHMT2Q9H2M3 363 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 MCM6Q14566 821 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 IFI16Q16666 785 aaKnown RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 GPT2Q8TD30 523 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CCSER1Q9C0I3 900 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 SLC9A2Q9UBY0 812 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 NUP188Q5SRE5 1749 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 TOGARAM1Q9Y4F4 1720 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CDC25AP30304 524 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 DDIT3P35638 169 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CCDC181Q5TID7 509 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 MSANTD4Q8NCY6 345 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 JPH1Q9HDC5 661 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 TUFT1Q9NNX1 390 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 KMT5AQ9NQR1 393 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 POTEMA6NI47 508 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 N4BP1O75113 896 aaKnown RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 TXNP10599 105 aaKnown RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CTTNQ14247 550 aaKnown RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 PLEKHH3Q7Z736 793 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 GPRASP2Q96D09 838 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CEP63Q96MT8 703 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 ACCSQ96QU6 501 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 MXRA8Q9BRK3 442 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 ZNF302Q9NR11 478 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 ARMCX3Q9UH62 379 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-211ENST00000413186 KCNH4Q9UQ05 1017 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 CEP83Q9Y592 693 aa9.38□□□□□ -0.91
SYNE1-211ENST00000413186 MEIS1O00470 390 aa9.37□□□□□ -0.91
SYNE1-211ENST00000413186 STRNO43815 780 aa9.37□□□□□ -0.91
SYNE1-211ENST00000413186 KIAA0754O94854 1291 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms