RNA–Protein interactions for RNA: ENST00000409909.7

LSM5-204, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM5, Length 740 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-204ENST00000409909 OTOP2Q7RTS6 562 aa20.3■□□□□ 0.84
LSM5-204ENST00000409909 NLRX1Q86UT6 975 aa20.3■□□□□ 0.84
LSM5-204ENST00000409909 RPUSD2Q8IZ73 545 aaKnown RBP20.3■□□□□ 0.84
LSM5-204ENST00000409909 GPRASP2Q96D09 838 aa20.3■□□□□ 0.84
LSM5-204ENST00000409909 PGBD1Q96JS3 809 aa20.3■□□□□ 0.84
LSM5-204ENST00000409909 hCG_1984214I3L0E3 225 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 NOP56O00567 594 aaKnown RBP20.29■□□□□ 0.84
LSM5-204ENST00000409909 LGALS2P05162 132 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 KCNA2P16389 499 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 PDIA3P30101 505 aaKnown RBP20.29■□□□□ 0.84
LSM5-204ENST00000409909 ZNF200P98182 395 aaPredicted RBP20.29■□□□□ 0.84
LSM5-204ENST00000409909 BFSP2Q13515 415 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 NTRK3Q16288 839 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 PKN1Q16512 942 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 DEFB128Q7Z7B8 93 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 ZNF713Q8N859 430 aaPredicted RBP20.29■□□□□ 0.84
LSM5-204ENST00000409909 RETREG2Q8NC44 543 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 TMEM260Q9NX78 707 aa20.29■□□□□ 0.84
LSM5-204ENST00000409909 H3BRB1 525 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 ADAMTS3O15072 1205 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 PRPF3O43395 683 aaKnown RBP20.28■□□□□ 0.84
LSM5-204ENST00000409909 PPFIA3O75145 1194 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 SCG2P13521 617 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 CLK2P49760 499 aaKnown RBP20.28■□□□□ 0.84
LSM5-204ENST00000409909 TEX2Q8IWB9 1127 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 CYP2W1Q8TAV3 490 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 PHKBQ93100 1093 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 UPF3BQ9BZI7 483 aaKnown RBP20.28■□□□□ 0.84
LSM5-204ENST00000409909 TM6SF1Q9BZW5 370 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 TUT1Q9H6E5 874 aaKnown RBP20.28■□□□□ 0.84
LSM5-204ENST00000409909 NCOA5Q9HCD5 579 aaKnown RBP20.28■□□□□ 0.84
LSM5-204ENST00000409909 JADE2Q9NQC1 790 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 CHD7Q9P2D1 2997 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 STXBP5LQ9Y2K9 1186 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 CYP46A1Q9Y6A2 500 aa20.28■□□□□ 0.84
LSM5-204ENST00000409909 TET1Q8NFU7 2136 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 FOSP01100 380 aaPredicted RBP20.27■□□□□ 0.84
LSM5-204ENST00000409909 DNAJB2P25686 324 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 PBX2P40425 430 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 CCT2P78371 535 aaKnown RBP20.27■□□□□ 0.84
LSM5-204ENST00000409909 SP4Q02446 784 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 MTMR1Q13613 665 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 GPNMBQ14956 572 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 CAGE1Q8TC20 777 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 WNT8BQ93098 351 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 CDHR1Q96JP9 859 aa20.27■□□□□ 0.84
LSM5-204ENST00000409909 LARP6Q9BRS8 491 aaKnown RBP20.27■□□□□ 0.84
LSM5-204ENST00000409909 TANC1Q9C0D5 1861 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 PRUNE2Q8WUY3 3088 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 RBAK-RBAKDNI3L0D1 243 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 PFKMP08237 780 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 HOXC8P31273 242 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 RFC2P35250 354 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 RBL2Q08999 1139 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 PTK7Q13308 1070 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 TRIM71Q2Q1W2 868 aaKnown RBP20.26■□□□□ 0.83
LSM5-204ENST00000409909 TRIM50Q86XT4 487 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 GIMAP8Q8ND71 665 aaPredicted RBP20.26■□□□□ 0.83
LSM5-204ENST00000409909 AFAP1L1Q8TED9 768 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 MXRA8Q9BRK3 442 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 ANO3Q9BYT9 981 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 PBX4Q9BYU1 374 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 EHMT1Q9H9B1 1298 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 PKD2L1Q9P0L9 805 aa20.26■□□□□ 0.83
LSM5-204ENST00000409909 SMIM10L2AP0DMW4 78 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 SMIM10L2BP0DMW5 78 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 CKBP12277 381 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 IFNAR1P17181 557 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 UTP14CQ5TAP6 766 aaKnown RBP20.25■□□□□ 0.83
LSM5-204ENST00000409909 CCDC155Q8N6L0 562 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 CDX2Q99626 313 aaPredicted RBP20.25■□□□□ 0.83
LSM5-204ENST00000409909 ZMYND12Q9H0C1 365 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 GLT8D2Q9H1C3 349 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 MTIF3Q9H2K0 278 aaKnown RBP20.25■□□□□ 0.83
LSM5-204ENST00000409909 KCNH7Q9NS40 1196 aa20.25■□□□□ 0.83
LSM5-204ENST00000409909 UNC80Q8N2C7 3258 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 GSTTP1A0A1W2PQM5 241 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 MAFGO15525 162 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 SELPP16109 830 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 SREBF1P36956 1147 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 AP3B2Q13367 1082 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 JAKMIP3Q5VZ66 844 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 TRAF7Q6Q0C0 670 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 LRRC8DQ7L1W4 858 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 SERINC5Q86VE9 423 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 TIFAQ96CG3 184 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 SLC26A6Q9BXS9 759 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 RNPEPQ9H4A4 650 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 SLC4A7Q9Y6M7 1214 aa20.24■□□□□ 0.83
LSM5-204ENST00000409909 TMEM265A0A087WTH1 108 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 ESYT2A0FGR8 921 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 C17orf102A2RUQ5 167 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 ARP10275 920 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 TCF7P36402 384 aaPredicted RBP20.23■□□□□ 0.83
LSM5-204ENST00000409909 CEP55Q53EZ4 464 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 ZNF274Q96GC6 653 aaPredicted RBP20.23■□□□□ 0.83
LSM5-204ENST00000409909 RNF26Q9BY78 433 aaPredicted RBP20.23■□□□□ 0.83
LSM5-204ENST00000409909 FTOQ9C0B1 505 aaKnown RBP eCLIP20.23■□□□□ 0.83
LSM5-204ENST00000409909 PDRG1Q9NUG6 133 aa20.23■□□□□ 0.83
LSM5-204ENST00000409909 GBF1Q92538 1859 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms