RNA–Protein interactions for RNA: ENST00000375315.6

C9orf3-203, Transcript of chromosome 9 open reading frame 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf3, Length 3,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-203ENST00000375315 ZNF233A6NK53 670 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 ATP2C2O75185 946 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 SMNDC1O75940 238 aaKnown RBP eCLIP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 CDKL5O76039 1030 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 CYLC1P35663 651 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 HERVK_113P62684 666 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 HIBCHQ6NVY1 386 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 C15orf52Q6ZUT6 534 aaKnown RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 LRRC47Q8N1G4 583 aaKnown RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 SPATA4Q8NEY3 305 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 HVCN1Q96D96 273 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 TNS1Q9HBL0 1735 aaKnown RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 AHCYL1O43865 530 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 NEFHP12036 1026 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 RASSF7Q02833 373 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 CUL4BQ13620 913 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 KRT31Q15323 416 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 SLC5A9Q2M3M2 681 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 ZNF572Q7Z3I7 529 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 SPATA20Q8TB22 786 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 C7orf43Q8WVR3 580 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 SEC16BQ96JE7 1060 aa13.36□□□□□ -0.27
C9orf3-203ENST00000375315 PRMT6Q96LA8 375 aaPredicted RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 LIMA1Q9UHB6 759 aaKnown RBP13.36□□□□□ -0.27
C9orf3-203ENST00000375315 RNF225M0QZC1 329 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 LIN7AO14910 233 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 MATR3P43243 847 aaKnown RBP eCLIP13.35□□□□□ -0.274e-6■■□□□ 13.2
C9orf3-203ENST00000375315 PPP1R7Q15435 360 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 DACT2Q5SW24 774 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 C8orf74Q6P047 294 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 IFT20Q8IY31 132 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 NOC3LQ8WTT2 800 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 BORCS6Q96GS4 357 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 NUP58Q9BVL2 599 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 VPS16Q9H269 839 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 KDM4CQ9H3R0 1056 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 IL17RBQ9NRM6 502 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 SNX12Q9UMY4 172 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 ANP32DO95626 131 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 COPB1P53618 953 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 PAK2Q13177 524 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 PSMD2Q13200 908 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 ITGB3BPQ13352 177 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 SPRED3Q2MJR0 410 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 DALRD3Q5D0E6 543 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 APOBEC3HQ6NTF7 200 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 SLC30A9Q6PML9 568 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 CREG2Q8IUH2 290 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 TRIM22Q8IYM9 498 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 RPUSD2Q8IZ73 545 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 YIPF3Q9GZM5 350 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 NOP53Q9NZM5 478 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 LUC7L2Q9Y383 392 aaKnown RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 FAM205AQ6ZU69 1335 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 FESP07332 822 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 HPDP32754 393 aaPredicted RBP13.35□□□□□ -0.27
C9orf3-203ENST00000375315 LIFRP42702 1097 aa13.35□□□□□ -0.27
C9orf3-203ENST00000375315 ARAP2Q8WZ64 1704 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 MYH8P13535 1937 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 BTBD18B2RXH4 712 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 GDF11O95390 407 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 PTPREP23469 700 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 PAFAH1B1P43034 410 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 NR5A1Q13285 461 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 RIPK1Q13546 671 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 SNX1Q13596 522 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 SEC23AQ15436 765 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 GKAP1Q5VSY0 366 aaPredicted RBP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 PNMA1Q8ND90 353 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 ACTN4O43707 911 aaKnown RBP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 CD44P16070 742 aaKnown RBP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 PPP4CP60510 307 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 THEMIS2Q5TEJ8 643 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 HAUS3Q68CZ6 603 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 USP17L2Q6R6M4 530 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 SGMS1Q86VZ5 419 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 DRAXINQ8NBI3 349 aaPredicted RBP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 UPF1Q92900 1129 aaKnown RBP eCLIP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 UBA5Q9GZZ9 404 aa13.34□□□□□ -0.27
C9orf3-203ENST00000375315 FRMPD2Q68DX3 1309 aaPredicted RBP13.34□□□□□ -0.27
C9orf3-203ENST00000375315 DDTLA6NHG4 134 aaPredicted RBP13.33□□□□□ -0.27
C9orf3-203ENST00000375315 TRAPPC3O43617 180 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 PLCG2P16885 1265 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 RASA1P20936 1047 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 KIF5AQ12840 1032 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 STRIP1Q5VSL9 837 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 MAATS1Q7Z4T9 603 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 MFN1Q8IWA4 741 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 HOMEZQ8IX15 550 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 MREGQ8N565 214 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 CCDC63Q8NA47 563 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 GPKOWQ92917 476 aaPredicted RBP eCLIP13.33□□□□□ -0.27
C9orf3-203ENST00000375315 TSGA10Q9BZW7 698 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 MTFR1LQ9H019 292 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 TAB2Q9NYJ8 693 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 ANAPC4Q9UJX5 808 aa13.33□□□□□ -0.27
C9orf3-203ENST00000375315 TFR2Q9UP52 801 aa13.33□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms