RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NSMCE1Q8WV22 266 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 VWDEQ8N2E2 1590 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 KRT81Q14533 505 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 FBXO33Q7Z6M2 555 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 RPAP3Q9H6T3 665 aaPredicted RBP16.28■□□□□ 0.2
COL17A1-201ENST00000353479 FAM184BQ9ULE4 1060 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 ANKRD13CQ8N6S4 541 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 FAM49AQ9H0Q0 323 aaPredicted RBP16.28■□□□□ 0.2
COL17A1-201ENST00000353479 PTPREP23469 700 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 CCNE1P24864 410 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 RAB20Q9NX57 234 aa16.28■□□□□ 0.2
COL17A1-201ENST00000353479 PRELPP51888 382 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 PEX3P56589 373 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 CEP128Q6ZU80 1094 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 CCDC89Q8N998 374 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 EPN1Q9Y6I3 576 aaPredicted RBP16.27■□□□□ 0.2
COL17A1-201ENST00000353479 MYL3P08590 195 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 ZSCAN20P17040 1043 aaPredicted RBP16.27■□□□□ 0.2
COL17A1-201ENST00000353479 CLUL1Q15846 466 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 COL23A1Q86Y22 540 aaPredicted RBP16.27■□□□□ 0.2
COL17A1-201ENST00000353479 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
COL17A1-201ENST00000353479 ZNF70Q9UC06 446 aaPredicted RBP16.27■□□□□ 0.2
COL17A1-201ENST00000353479 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.27■□□□□ 0.19
COL17A1-201ENST00000353479 LRRN2O75325 713 aa16.27■□□□□ 0.19
COL17A1-201ENST00000353479 IRX5P78411 483 aaPredicted RBP16.27■□□□□ 0.19
COL17A1-201ENST00000353479 MTMR2Q13614 643 aa16.27■□□□□ 0.19
COL17A1-201ENST00000353479 PPANQ9NQ55 473 aaKnown RBP16.27■□□□□ 0.19
COL17A1-201ENST00000353479 ELF2Q15723 593 aa16.27■□□□□ 0.19
COL17A1-201ENST00000353479 ELP3Q9H9T3 547 aa16.27■□□□□ 0.19
COL17A1-201ENST00000353479 POLR2BP30876 1174 aaKnown RBP16.26■□□□□ 0.19
COL17A1-201ENST00000353479 RBL2Q08999 1139 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 CUL4BQ13620 913 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 HADHQ16836 314 aaKnown RBP16.26■□□□□ 0.19
COL17A1-201ENST00000353479 CLEC10AQ8IUN9 316 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 ARFGAP2Q8N6H7 521 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 MAIP1Q8WWC4 291 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 SCAF8Q9UPN6 1271 aaKnown RBP16.26■□□□□ 0.19
COL17A1-201ENST00000353479 GOLGA8IPA6NC78 632 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 GOLGA8JA6NMD2 632 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 GYS1P13807 737 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 MXRA7P84157 204 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 ZBTB16Q05516 673 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 TTBK2Q6IQ55 1244 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 HHIPL2Q6UWX4 724 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 NRBP1Q9UHY1 535 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 DEPDC5O75140 1603 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 U2AF2P26368 475 aaKnown RBP eCLIP16.26■□□□□ 0.19
COL17A1-201ENST00000353479 TSGA10IPQ3SY00 556 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 LRFN2Q9ULH4 789 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 KLRK1P26718 216 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 BPIFB4P59827 614 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 MTMR4Q9NYA4 1195 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 SYNJ2BP-COX16A0A087WUM0 186 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 K7ERI5 159 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 EP400NLQ6ZTU2 488 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 SRBD1Q8N5C6 995 aaKnown RBP16.26■□□□□ 0.19
COL17A1-201ENST00000353479 COX16Q9P0S2 106 aa16.26■□□□□ 0.19
COL17A1-201ENST00000353479 THAP12O43422 761 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 RASSF7Q02833 373 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 CASC4Q6P4E1 433 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 ENOX1Q8TC92 643 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 GCNT4Q9P109 453 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 WDR64B1ANS9 1081 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 ABCD1P33897 745 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 STAT3P40763 770 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 EXOSC10Q01780 885 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 CACTINQ8WUQ7 758 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 MIS12Q9H081 205 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 HAUS4Q9H6D7 363 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 TBC1D22BQ9NU19 505 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 NXF1Q9UBU9 619 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 HPDP32754 393 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 RNASELQ05823 741 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 ANGEL2Q5VTE6 544 aaKnown RBP16.25■□□□□ 0.19
COL17A1-201ENST00000353479 TRIM50Q86XT4 487 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 ACAD9Q9H845 621 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 E9PMD0 336 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 IFNB1P01574 187 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 CAPN2P17655 700 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 CASP1P29466 404 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 GUCY1A2P33402 732 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 GABPAQ06546 454 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 SBK1Q52WX2 424 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 DYDC2Q96IM9 177 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 MMP19Q99542 508 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 GDAQ9Y2T3 454 aa16.25■□□□□ 0.19
COL17A1-201ENST00000353479 PRAMEF18Q5VWM3 479 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 RRAGDQ9NQL2 400 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 NKIRAS1Q9NYS0 192 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 HYOU1Q9Y4L1 999 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 BSPRYQ5W0U4 402 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 LDHDQ86WU2 507 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 FAM76AQ8TAV0 307 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 FAM20AQ96MK3 541 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 ALDH8A1Q9H2A2 487 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 THAP9Q9H5L6 903 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 GMPSP49915 693 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 SND1Q7KZF4 910 aaKnown RBP eCLIP16.24■□□□□ 0.19
COL17A1-201ENST00000353479 CPLX4Q7Z7G2 160 aa16.24■□□□□ 0.19
COL17A1-201ENST00000353479 POLD4Q9HCU8 107 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms