RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KCNJ12Q14500 433 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 INTS8Q75QN2 995 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 FAM186BQ8IYM0 893 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 GMCL1P1Q8NEA9 526 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 IPO4Q8TEX9 1081 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 WDR18Q9BV38 432 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 CPVLQ9H3G5 476 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TOPORSQ9NS56 1045 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ATRNO75882 1429 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 CTAGE9A4FU28 777 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 RPA1P27694 616 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 DPCR1Q3MIW9 517 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 RIC1Q4ADV7 1423 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 SMAP1Q8IYB5 467 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 STAG2Q8N3U4 1231 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 GPRASP2Q96D09 838 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TSGA10Q9BZW7 698 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 NBPF3Q9H094 633 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 HPS5Q9UPZ3 1129 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TNPO2O14787 897 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 MAGEB2O15479 319 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 STRNO43815 780 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 HARSP12081 509 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ATF7P17544 494 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 PTGS1P23219 599 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 PRELPP51888 382 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 EFNA5P52803 228 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 RAD51AP2Q09MP3 1159 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 GPT2Q8TD30 523 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 LRRC45Q96CN5 670 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 NT5C1BQ96P26 610 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 CCDC94Q9BW85 323 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 C17orf75Q9HAS0 396 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 HESX1Q9UBX0 185 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 RWDD2AQ9UIY3 292 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ZEB2O60315 1214 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 DTNBO60941 627 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TGFB3P10600 412 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 PSMC2P35998 433 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ECE1P42892 770 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 YARSP54577 528 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 MORC3Q14149 939 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 LONRF3Q496Y0 759 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 SLC39A2Q9NP94 309 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 INCENPQ9NQS7 918 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 GJB4Q9NTQ9 266 aa7.54□□□□□ -1.2
SF3B1-201ENST00000335508 ZC3H4Q9UPT8 1303 aaKnown RBP7.54□□□□□ -1.2
SF3B1-201ENST00000335508 TBC1D12O60347 775 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 EYA4O95677 639 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CHGBP05060 677 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CDC25AP30304 524 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TNNC1P63316 161 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 BAATQ14032 418 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 EXOC3L4Q17RC7 722 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 EDRF1Q3B7T1 1238 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 XXYLT1Q8NBI6 393 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 C2orf40Q9H1Z8 148 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 BLZF1Q9H2G9 400 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 RPAP3Q9H6T3 665 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CTNND2Q9UQB3 1225 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 DDTLA6NHG4 134 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 GAS2O43903 313 aaKnown RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 INPP5BP32019 993 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 FAM193AP78312 1265 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 FAM47CQ5HY64 1035 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TRMT44Q8IYL2 757 aaKnown RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CCDC77Q9BR77 488 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 GBA2Q9HCG7 927 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TUFT1Q9NNX1 390 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 MYO1AQ9UBC5 1043 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TUBE1Q9UJT0 475 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TAF6LQ9Y6J9 622 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 URB1O60287 2271 aaKnown RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 MYOM1P52179 1685 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 FGRP09769 529 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 HOXA13P31271 388 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CASQ1P31415 396 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 MAPK6Q16659 721 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 NAALADL2Q58DX5 795 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 AXDND1Q5T1B0 1012 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 SFMBT2Q5VUG0 894 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 CCDC102AQ96A19 550 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TRERF1Q96PN7 1200 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 FTOQ9C0B1 505 aaKnown RBP eCLIP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 DAAM1Q9Y4D1 1078 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 TNNC2P02585 160 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 ICAM1P05362 532 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 SHMT1P34896 483 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 VAV2P52735 878 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 COPB1P53618 953 aaKnown RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 MTMR2Q13614 643 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 UBE2SQ16763 222 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 PADI6Q6TGC4 694 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 GPBP1L1Q9HC44 474 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 FAM207AQ9NSI2 230 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 GPRC5DQ9NZD1 345 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 USP50Q70EL3 339 aaPredicted RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 ATG4CQ96DT6 458 aa7.53□□□□□ -1.2
SF3B1-201ENST00000335508 RAVER2Q9HCJ3 691 aaKnown RBP7.53□□□□□ -1.2
SF3B1-201ENST00000335508 ODF2LQ9ULJ1 636 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms