RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 CLIC2O15247 247 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 PLA2G4BP0C869 781 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 CYP2B6P20813 491 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.64■□□□□ 0.41
PDGFB-201ENST00000331163 BCAS3Q9H6U6 928 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 MYH1P12882 1939 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 SYNRGQ9UMZ2 1314 aa17.64■□□□□ 0.41
PDGFB-201ENST00000331163 RREB1Q92766 1687 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 CCDC66A2RUB6 948 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 NPEPPSP55786 919 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PLA2G4FQ68DD2 849 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 SWSAP1Q6NVH7 229 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 FBXO38Q6PIJ6 1188 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 SYTL5Q8TDW5 730 aaPredicted RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 SEPT9Q9UHD8 586 aaPredicted RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PAXBP1Q9Y5B6 917 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 ADAMTSL1Q8N6G6 1762 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PDHXO00330 501 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 SOX10P56693 466 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 TSR1Q2NL82 804 aaKnown RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 RBM46Q8TBY0 533 aaKnown RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PANK4Q9NVE7 773 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 TMEM51Q9NW97 253 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PCDHB13Q9Y5F0 798 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 ATRNL1Q5VV63 1379 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 TBC1D12O60347 775 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 FANCCQ00597 558 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 PPFIBP1Q86W92 1011 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 SLFN12Q8IYM2 578 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 NSUN6Q8TEA1 469 aaKnown RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 A1CFQ9NQ94 594 aaKnown RBP17.63■□□□□ 0.41
PDGFB-201ENST00000331163 CEP350Q5VT06 3117 aa17.63■□□□□ 0.41
PDGFB-201ENST00000331163 TNS1Q9HBL0 1735 aaKnown RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 TPM1P09493 284 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 AP3B2Q13367 1082 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 ERCC6LQ2NKX8 1250 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 LTBP3Q9NS15 1303 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 SPDYE16A6NNV3 312 aaPredicted RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 hCG_1984214I3L0E3 225 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 NPM3O75607 178 aaKnown RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 ARL6IP4Q66PJ3 421 aaKnown RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 ZNF713Q8N859 430 aaPredicted RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 TNFRSF25Q93038 417 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 EIF2AK1Q9BQI3 630 aaKnown RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 R3HDMLQ9H3Y0 253 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 USP20Q9Y2K6 914 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 EML1O00423 815 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 PRPF6O94906 941 aaKnown RBP17.62■□□□□ 0.41
PDGFB-201ENST00000331163 PAK1Q13153 545 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 GNPTABQ3T906 1256 aa17.62■□□□□ 0.41
PDGFB-201ENST00000331163 MED24O75448 989 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 CYP2J2P51589 502 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 TERF2Q15554 542 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 ZNF397Q8NF99 534 aaPredicted RBP17.61■□□□□ 0.41
PDGFB-201ENST00000331163 SLC38A10Q9HBR0 1119 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 RMND1Q9NWS8 449 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 RSPH10B2B2RC85 870 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 RSPH10BP0C881 870 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 DSG3P32926 999 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 LXNQ9BS40 222 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 TRPC6Q9Y210 931 aa17.61■□□□□ 0.41
PDGFB-201ENST00000331163 TUBGCP6Q96RT7 1819 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 ACTN4O43707 911 aaKnown RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 GTPBP6O43824 516 aaPredicted RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 GCFC2P16383 781 aaKnown RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 PRCPP42785 496 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 ODR4Q5SWX8 454 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 FBXO16Q8IX29 292 aaPredicted RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 CCDC65Q8IXS2 484 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 MMP19Q99542 508 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 GABBR1Q9UBS5 961 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 ATP9AO75110 1047 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 UBXN1Q04323 297 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 STK4Q13043 487 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 CCAR2Q8N163 923 aaKnown RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 CEP170P1Q96L14 293 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 TIGD1Q96MW7 591 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 SPATC1LQ9H0A9 340 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 PCIF1Q9H4Z3 704 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 MYMKA6NI61 221 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 USP8P40818 1118 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 GABPB1Q06547 395 aaPredicted RBP17.6■□□□□ 0.41
PDGFB-201ENST00000331163 SYT10Q6XYQ8 523 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 CATSPER3Q86XQ3 398 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 GLIS3Q8NEA6 775 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 HAS1Q92839 578 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 PORCNQ9H237 461 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 BTBD7Q9P203 1132 aa17.6■□□□□ 0.41
PDGFB-201ENST00000331163 SFPQP23246 707 aaKnown RBP eCLIP17.59■□□□□ 0.41
PDGFB-201ENST00000331163 CCND2P30279 289 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 ADKP55263 362 aaKnown RBP17.59■□□□□ 0.41
PDGFB-201ENST00000331163 PDXDC2PQ6P474 469 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 SEPT11Q9NVA2 429 aaKnown RBP17.59■□□□□ 0.41
PDGFB-201ENST00000331163 TSKSQ9UJT2 592 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 CDR1P51861 262 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 FSTL1Q12841 308 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 FAM26FQ5R3K3 315 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 TRIM50Q86XT4 487 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 LRRC8AQ8IWT6 810 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 TSG101Q99816 390 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms