RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 EHD4Q9H223 541 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 ABCB6Q9NP58 842 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 NYAP2Q9P242 653 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 COL4A3BPQ9Y5P4 624 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 KDM3AQ9Y4C1 1321 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 CCDC151A5D8V7 595 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 ZNF263O14978 683 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 MOCS3O95396 460 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 POLR2FP61218 127 aaKnown RBP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 MEA1Q16626 185 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 LRRC55Q6ZSA7 311 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 DCAF4Q8WV16 495 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 EMILIN3Q9NT22 766 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 FAM86B1E9PN63 330 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 BUB1O43683 1085 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 USO1O60763 962 aaKnown RBP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 PHACTR2O75167 634 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 ERLIN1O75477 346 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 FAM86B2P0C5J1 330 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 TNNT3P45378 269 aaPredicted RBP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 GFPT1Q06210 699 aaPredicted RBP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 SEMA3FQ13275 785 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 MIGA2Q7L4E1 593 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 CATSPER3Q86XQ3 398 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 LSM14BQ9BX40 385 aaKnown RBP12.78□□□□□ -0.36
PTPN2-201ENST00000309660 TMOD2Q9NZR1 351 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 PRDM4Q9UKN5 801 aa12.78□□□□□ -0.36
PTPN2-201ENST00000309660 A0A1W2PRG0 241 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 EIF3CLB5ME19 914 aaKnown RBP12.77□□□□□ -0.36
PTPN2-201ENST00000309660 CYP11B2P19099 503 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 ADAM9Q13443 819 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 RAPGEF1Q13905 1077 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 HAUS3Q68CZ6 603 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 EIF3CQ99613 913 aaKnown RBP12.77□□□□□ -0.36
PTPN2-201ENST00000309660 BCAS3Q9H6U6 928 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 RGL1Q9NZL6 768 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 ATF5Q9Y2D1 282 aaPredicted RBP12.77□□□□□ -0.36
PTPN2-201ENST00000309660 SIK3Q9Y2K2 1263 aa12.77□□□□□ -0.36
PTPN2-201ENST00000309660 ZBTB12Q9Y330 459 aaPredicted RBP12.77□□□□□ -0.36
PTPN2-201ENST00000309660 MYO3BQ8WXR4 1341 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 MAGEA1P43355 309 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 RRP1BQ14684 758 aaKnown RBP12.77□□□□□ -0.37
PTPN2-201ENST00000309660 DCAF17Q5H9S7 520 aaPredicted RBP12.77□□□□□ -0.37
PTPN2-201ENST00000309660 CCDC170Q8IYT3 715 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 EHBP1Q8NDI1 1231 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 ACER1Q8TDN7 264 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 PIGOQ8TEQ8 1089 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 TBC1D5Q92609 795 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 BHMT2Q9H2M3 363 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 PKD2L1Q9P0L9 805 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 DNM3Q9UQ16 869 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 CAPN6Q9Y6Q1 641 aa12.77□□□□□ -0.37
PTPN2-201ENST00000309660 PRPF6O94906 941 aaKnown RBP12.76□□□□□ -0.37
PTPN2-201ENST00000309660 NR2F2P24468 414 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 CASP5P51878 434 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 VAV2P52735 878 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 RASSF7Q02833 373 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 ERMNQ8TAM6 284 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 FUT8Q9BYC5 575 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PLAGL2Q9UPG8 496 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PCDHA13Q9Y5I0 950 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 RSPH10B2B2RC85 870 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 RSPH10BP0C881 870 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 USP11P51784 963 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 AMPD2Q01433 879 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PSMD2Q13200 908 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 BRD3Q15059 726 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 SLFN12Q8IYM2 578 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 CCDC102AQ96A19 550 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 MTMR8Q96EF0 704 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PSMD14O00487 310 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 FAM83BQ5T0W9 1011 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 UTP14CQ5TAP6 766 aaKnown RBP12.76□□□□□ -0.37
PTPN2-201ENST00000309660 CC2D2BQ6DHV5 1058 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 SFR1Q86XK3 245 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 SCFD1Q8WVM8 642 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PKNOX2Q96KN3 472 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 IDI2Q9BXS1 227 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 GLT8D2Q9H1C3 349 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 PDE11AQ9HCR9 933 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 SMARCAL1Q9NZC9 954 aa12.76□□□□□ -0.37
PTPN2-201ENST00000309660 TACC1O75410 805 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 TUBB2AQ13885 445 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 CTTNQ14247 550 aaKnown RBP12.75□□□□□ -0.37
PTPN2-201ENST00000309660 TRAPPC11Q7Z392 1133 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 TPH2Q8IWU9 490 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 GSPT2Q8IYD1 628 aaKnown RBP12.75□□□□□ -0.37
PTPN2-201ENST00000309660 TUBB2BQ9BVA1 445 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 PLEKHA4Q9H4M7 779 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 KCNMB3Q9NPA1 279 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 PRR12Q9ULL5 1215 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 NCK2O43639 380 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 C2orf54Q08AI8 447 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 PTPROQ16827 1216 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 CDAN1Q8IWY9 1227 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 FLAD1Q8NFF5 587 aa12.75□□□□□ -0.37
PTPN2-201ENST00000309660 MKL1Q969V6 931 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms