RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CETPP11597 493 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 PTPRAP18433 802 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 EEF1GP26641 437 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 CYP2J2P51589 502 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 ARID5AQ03989 594 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 MAP1SQ66K74 1059 aaPredicted RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 APBB1IPQ7Z5R6 666 aaPredicted RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 FMNL3Q8IVF7 1028 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 SAMD3Q8N6K7 520 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 TAF4BQ92750 862 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 EEF2KMTQ96G04 330 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 EIF2AK1Q9BQI3 630 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 SUGCTQ9HAC7 445 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 EMILIN3Q9NT22 766 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 ZHX1Q9UKY1 873 aaPredicted RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 GINS2Q9Y248 185 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 SREBF1P36956 1147 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 QARSP47897 775 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 HUNKP57058 714 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 KRT83P78385 493 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 NEDD9Q14511 834 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 PPP2R5AQ15172 486 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 EARS2Q5JPH6 523 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 TYW1BQ6NUM6 668 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 ZBTB8OSQ8IWT0 167 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 DHX37Q8IY37 1157 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 GJA10Q969M2 543 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 BEGAINQ9BUH8 593 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 CCL15-CCL14A0A0B4J2E2 113 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 CXCL11O14625 94 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 SLC26A4O43511 780 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 XRCC5P13010 732 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 COPB1P53618 953 aaKnown RBP12.8□□□□□ -0.36
VPS4A-201ENST00000254950 GNG11P61952 73 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 CCL15Q16663 113 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 XRRA1Q6P2D8 792 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 GMLQ99445 158 aa12.8□□□□□ -0.36
VPS4A-201ENST00000254950 PLIN4Q96Q06 1357 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 A0A1W2PRG0 241 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 CASQ1P31415 396 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 METTL13Q8N6R0 699 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 IQCDQ96DY2 449 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 CNOT6LQ96LI5 555 aaKnown RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 MXRA8Q9BRK3 442 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 MAP3K20Q9NYL2 800 aaKnown RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 SCN7AQ01118 1682 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 LRRIQ4A6NIV6 560 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 COBLO75128 1261 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 BIRC3Q13489 604 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 EHBP1Q8NDI1 1231 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 ZC3H15Q8WU90 426 aaKnown RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 BPIFA3Q9BQP9 254 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 GBA2Q9HCG7 927 aaPredicted RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 SAMSN1Q9NSI8 373 aaKnown RBP12.79□□□□□ -0.36
VPS4A-201ENST00000254950 SLC37A4O43826 429 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 SNHG28P0DPA3 235 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 RAPGEF1Q13905 1077 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 MTERF2Q49AM1 385 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 BANK1Q8NDB2 785 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 TUBGCP2Q9BSJ2 902 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 WDR18Q9BV38 432 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 TRIM9Q9C026 710 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 TUFT1Q9NNX1 390 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 HPSEQ9Y251 543 aa12.79□□□□□ -0.36
VPS4A-201ENST00000254950 NR2F2P24468 414 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 RDH13Q8NBN7 331 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 ALS2CR12Q96Q35 445 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 RIT2Q99578 217 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 LXNQ9BS40 222 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 TUBE1Q9UJT0 475 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 PFASO15067 1338 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 ATRNL1Q5VV63 1379 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 ACTN4O43707 911 aaKnown RBP12.78□□□□□ -0.36
VPS4A-201ENST00000254950 LRRC63Q05C16 580 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 KCNB1Q14721 858 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 VWA3BQ502W6 1294 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 ARMCX5Q6P1M9 558 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 MAP7D2Q96T17 732 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 DNAJC18Q9H819 358 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 NID2Q14112 1375 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 IGKV6D-41A0A0C4DH26 115 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 TMOD1P28289 359 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 LIG4P49917 911 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 NKX2-3Q8TAU0 364 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 PARK7Q99497 189 aaKnown RBP12.78□□□□□ -0.36
VPS4A-201ENST00000254950 RGL1Q9NZL6 768 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 PUF60Q9UHX1 559 aaKnown RBP12.78□□□□□ -0.36
VPS4A-201ENST00000254950 PCDHA10Q9Y5I2 948 aa12.78□□□□□ -0.36
VPS4A-201ENST00000254950 ASB14A6NK59 587 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 DSG3P32926 999 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 ZNF157P51786 506 aaPredicted RBP12.77□□□□□ -0.36
VPS4A-201ENST00000254950 PSMC5P62195 406 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 PPP2R3AQ06190 1150 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 SHROOM1Q2M3G4 852 aaPredicted RBP12.77□□□□□ -0.36
VPS4A-201ENST00000254950 BTNL9Q6UXG8 535 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 ELOA2Q8IYF1 753 aaPredicted RBP12.77□□□□□ -0.36
VPS4A-201ENST00000254950 EXOC8Q8IYI6 725 aa12.77□□□□□ -0.36
VPS4A-201ENST00000254950 TAAR1Q96RJ0 339 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms