RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 HERC6Q8IVU3 1022 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 CCDC155Q8N6L0 562 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 CUL5Q93034 780 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 NEK1Q96PY6 1258 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 GPR20Q99678 358 aa25.49■■□□□ 1.67
VTI1B-201ENST00000216456 PTPRSQ13332 1948 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 H3BRB1 525 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 PIK3CDO00329 1044 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 ATP9AO75110 1047 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 EXOSC10Q01780 885 aaKnown RBP25.48■■□□□ 1.67
VTI1B-201ENST00000216456 PTK7Q13308 1070 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 GNPTABQ3T906 1256 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 UTP14CQ5TAP6 766 aaKnown RBP25.48■■□□□ 1.67
VTI1B-201ENST00000216456 PCNX4Q63HM2 1172 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 TYW1BQ6NUM6 668 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 SGMS1Q86VZ5 419 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 TUT1Q9H6E5 874 aaKnown RBP25.48■■□□□ 1.67
VTI1B-201ENST00000216456 PSTPIP2Q9H939 334 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 PKD2L1Q9P0L9 805 aa25.48■■□□□ 1.67
VTI1B-201ENST00000216456 LCHNA4D1U4 455 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 NOP56O00567 594 aaKnown RBP25.47■■□□□ 1.67
VTI1B-201ENST00000216456 TREHO43280 583 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 FIBPO43427 364 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 SMIM10L2AP0DMW4 78 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 SMIM10L2BP0DMW5 78 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 WDR5P61964 334 aaKnown RBP25.47■■□□□ 1.67
VTI1B-201ENST00000216456 APOA5Q6Q788 366 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 METTL7BQ6UX53 244 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 HEATR3Q7Z4Q2 680 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 SLC9A7Q96T83 725 aa25.47■■□□□ 1.67
VTI1B-201ENST00000216456 CNTNAP5Q8WYK1 1306 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 CXCL10P02778 98 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 CALM1P0DP23 149 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 CALM2P0DP24 149 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 CALM3P0DP25 149 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 ITGB5P18084 799 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 KRT40Q6A162 431 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 MICALL1Q8N3F8 863 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 PGBD1Q96JS3 809 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 RNPEPQ9H4A4 650 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 SETD4Q9NVD3 440 aa25.46■■□□□ 1.67
VTI1B-201ENST00000216456 C17orf102A2RUQ5 167 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 CDC45O75419 566 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 THPOP40225 353 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 NEDD9Q14511 834 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 WWC2Q6AWC2 1192 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 SERINC5Q86VE9 423 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 ATP6V0A1Q93050 837 aa25.45■■□□□ 1.66
VTI1B-201ENST00000216456 STAM2O75886 525 aa25.44■■□□□ 1.66
VTI1B-201ENST00000216456 HOXC8P31273 242 aa25.44■■□□□ 1.66
VTI1B-201ENST00000216456 TAP1Q03518 808 aa25.44■■□□□ 1.66
VTI1B-201ENST00000216456 FUT2Q10981 343 aa25.44■■□□□ 1.66
VTI1B-201ENST00000216456 PHOSPHO2Q8TCD6 241 aa25.44■■□□□ 1.66
VTI1B-201ENST00000216456 FAM217BQ9NTX9 383 aaPredicted RBP25.44■■□□□ 1.66
VTI1B-201ENST00000216456 BAIAP3O94812 1187 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 CTSHP09668 335 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 KCNJ6P48051 423 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 RNF20Q5VTR2 975 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 FAM117BQ6P1L5 589 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 CNKSR3Q6P9H4 555 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 DHX32Q7L7V1 743 aaKnown RBP25.43■■□□□ 1.66
VTI1B-201ENST00000216456 ARNTL2Q8WYA1 636 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 PCDHA6Q9UN73 950 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 PCDHA8Q9Y5H6 950 aa25.43■■□□□ 1.66
VTI1B-201ENST00000216456 KCNA2P16389 499 aa25.42■■□□□ 1.66
VTI1B-201ENST00000216456 CDC27P30260 824 aa25.42■■□□□ 1.66
VTI1B-201ENST00000216456 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.42■■□□□ 1.663e-7■■■□□ 16.7
VTI1B-201ENST00000216456 TRANK1O15050 2925 aa25.42■■□□□ 1.66
VTI1B-201ENST00000216456 KLF18A0A0U1RQI7 1052 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 TLL1O43897 1013 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 RTN1Q16799 776 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 NLRX1Q86UT6 975 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 DBF4BQ8NFT6 615 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 CYP2W1Q8TAV3 490 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 USP26Q9BXU7 913 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 UBIAD1Q9Y5Z9 338 aa25.41■■□□□ 1.66
VTI1B-201ENST00000216456 V9GY48 417 aaPredicted RBP25.41■■□□□ 1.66
VTI1B-201ENST00000216456 GSTTP1A0A1W2PQM5 241 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 RSPH10B2B2RC85 870 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 ADAMTS3O15072 1205 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 ZBTB43O43298 467 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 RSPH10BP0C881 870 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 TSGA10IPQ3SY00 556 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 XRRA1Q6P2D8 792 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 SYNE3Q6ZMZ3 975 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 ZBTB10Q96DT7 871 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 SENP7Q9BQF6 1050 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 TMEM260Q9NX78 707 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 NAP1L2Q9ULW6 460 aaPredicted RBP25.4■■□□□ 1.66
VTI1B-201ENST00000216456 XIRP2A4UGR9 3374 aa25.4■■□□□ 1.66
VTI1B-201ENST00000216456 GOLGA8AA7E2F4 631 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 GOLGA8BA8MQT2 603 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 LGR5O75473 907 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 MARK3P27448 753 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 TCF7P36402 384 aaPredicted RBP25.39■■□□□ 1.66
VTI1B-201ENST00000216456 NAPAP54920 295 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 LMBR1Q8WVP7 490 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 GPRASP2Q96D09 838 aa25.39■■□□□ 1.66
VTI1B-201ENST00000216456 SPDYE3A6NKU9 549 aa25.38■■□□□ 1.65
VTI1B-201ENST00000216456 STXBP3O00186 592 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms