RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	DUO1	P53168	247 aa	Known RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	TOF1	P53840	1238 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	YNL146W	P53906	100 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	MSC1	Q03104	513 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	LUC7	Q07508	261 aa	Predicted RBP	4.69	□□□□□ -1.66
RRP40	YOL142W	YEH2	Q07950	538 aa		4.69	□□□□□ -1.66
RRP40	YOL142W	COX4	P04037	155 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	MRS3	P10566	314 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	DPH2	P32461	534 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	SSE2	P32590	693 aa	Known RBP	4.68	□□□□□ -1.66
RRP40	YOL142W	SAC6	P32599	642 aa	Known RBP	4.68	□□□□□ -1.66
RRP40	YOL142W	ICS2	P38284	255 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	MNP1	P53163	194 aa	Predicted RBP	4.68	□□□□□ -1.66
RRP40	YOL142W	DUG3	P53871	357 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	RTT103	Q05543	409 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	THI20	Q08224	551 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	YOL075C	Q08234	1294 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	HUA2	Q12134	243 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	HIF1	Q12373	385 aa		4.68	□□□□□ -1.66
RRP40	YOL142W	SGV1	P23293	657 aa	Known RBP	4.67	□□□□□ -1.66
RRP40	YOL142W	YBR144C	P34215	104 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	RPL32	P38061	130 aa	Known RBP	4.67	□□□□□ -1.66
RRP40	YOL142W	ALD5	P40047	520 aa	Known RBP	4.67	□□□□□ -1.66
RRP40	YOL142W	LCB2	P40970	561 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	TOS3	P43637	560 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	SAM50	P53969	484 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	RHO4	Q00246	291 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	NGL3	Q03210	505 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	ECM7	Q06200	448 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	NOP58	Q12499	511 aa	Known RBP	4.67	□□□□□ -1.66
RRP40	YOL142W	YPR117W	Q06116	2489 aa		4.67	□□□□□ -1.66
RRP40	YOL142W	PSO2	P30620	661 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	VPS17	P32913	551 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	ECM15	P35195	104 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	VID24	P38263	362 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	YTA12	P40341	825 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	SNG1	P46950	547 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	VID30	P53076	958 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	SVL3	Q03088	825 aa	Known RBP	4.66	□□□□□ -1.66
RRP40	YOL142W	YMR087W	Q04299	284 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	DON1	Q05610	365 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	TLG2	Q08144	397 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	FMP40	Q08968	688 aa	Predicted RBP	4.66	□□□□□ -1.66
RRP40	YOL142W	YDR056C	Q12025	205 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	MED1	Q12321	566 aa		4.66	□□□□□ -1.66
RRP40	YOL142W	OM45	P16547	393 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	DRE2	P36152	348 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	MRX3	P38172	270 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	CCT6	P39079	546 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	DHH1	P39517	506 aa	Known RBP	4.65	□□□□□ -1.67
RRP40	YOL142W	IKS1	P47042	667 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	SHE10	P53075	577 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	EBS1	Q03466	884 aa	Known RBP	4.65	□□□□□ -1.67
RRP40	YOL142W	COG4	Q06096	861 aa		4.65	□□□□□ -1.67
RRP40	YOL142W	ADE4	P04046	510 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	HIP1	P06775	603 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	RPL4A	P10664	362 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	PEP5	P12868	1029 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	SEC62	P21825	274 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	SGF29	P25554	259 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	MUD1	P32605	298 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	YET1	P35723	206 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	YKL023W	P36103	277 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	MRPL10	P36520	322 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	YHL026C	P38740	315 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	NOP16	P40007	231 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	RPL4B	P49626	362 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	RSC1	P53236	928 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	BUD32	P53323	261 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	TIM8	P57744	87 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	RPM2	Q02773	1202 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	SHR3	Q02774	210 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	GLO2	Q05584	274 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	HCR1	Q05775	265 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	RLP24	Q07915	199 aa	Known RBP	4.64	□□□□□ -1.67
RRP40	YOL142W	SDH5	Q08230	162 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	NMD4	Q12129	218 aa		4.64	□□□□□ -1.67
RRP40	YOL142W	NCE102	Q12207	173 aa	RIP-Chip data	4.64	□□□□□ -1.67	not detected
RRP40	YOL142W	CCH1	P50077	2039 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	SEM1	O94742	89 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	CDC37	P06101	506 aa	Known RBP	4.63	□□□□□ -1.67
RRP40	YOL142W	MRP13	P12686	339 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	SAN1	P22470	610 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	SKG6	P32900	734 aa	Predicted RBP	4.63	□□□□□ -1.67
RRP40	YOL142W	BUD2	P33314	1104 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	TIF3	P34167	436 aa	Known RBP	4.63	□□□□□ -1.67
RRP40	YOL142W	RPC25	P35718	212 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	MMS4	P38257	691 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	SLX1	P38324	304 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	CIN4	P39110	191 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	FLC2	P39719	783 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	YER186C	P40101	306 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	LAM5	P43560	674 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	YGR126W	P53274	230 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	YNL134C	P53912	376 aa	Known RBP	4.63	□□□□□ -1.67
RRP40	YOL142W	YBR298C-A	Q8TGK4	73 aa		4.63	□□□□□ -1.67
RRP40	YOL142W	AAC3	P18238	307 aa		4.62	□□□□□ -1.67
RRP40	YOL142W	SIP2	P34164	415 aa	Known RBP	4.62	□□□□□ -1.67
RRP40	YOL142W	YNK1	P36010	153 aa	Known RBP	4.62	□□□□□ -1.67
RRP40	YOL142W	UPF3	P48412	387 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms