RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W YPR097WQ06839 1073 aa5.7□□□□□ -1.5
ATG4YNL223W SRO7Q12038 1033 aa5.7□□□□□ -1.5
ATG4YNL223W TY2A-BQ12260 438 aa5.7□□□□□ -1.5
ATG4YNL223W TY2A-OR2Q12293 438 aa5.7□□□□□ -1.5
ATG4YNL223W NTO1Q12311 748 aa5.7□□□□□ -1.5
ATG4YNL223W GPR1Q12361 961 aa5.7□□□□□ -1.5
ATG4YNL223W TY2A-DR1Q12392 438 aa5.7□□□□□ -1.5
ATG4YNL223W TY2A-OR1Q12439 438 aa5.7□□□□□ -1.5
ATG4YNL223W TY2A-DR3Q99303 438 aa5.7□□□□□ -1.5
ATG4YNL223W MDM35O60200 86 aa5.69□□□□□ -1.5
ATG4YNL223W ARP2P32381 391 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W CDC3P32457 520 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W TCD2P36101 447 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W TRM7P38238 310 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W RCK1P38622 512 aa5.69□□□□□ -1.5
ATG4YNL223W YHL012WP38709 493 aa5.69□□□□□ -1.5
ATG4YNL223W WSC4P38739 605 aa5.69□□□□□ -1.5
ATG4YNL223W SWD1P39706 426 aa5.69□□□□□ -1.5
ATG4YNL223W PDS1P40316 373 aaPredicted RBP5.69□□□□□ -1.5
ATG4YNL223W RIC1P40395 1056 aa5.69□□□□□ -1.5
ATG4YNL223W APQ12P40532 138 aa5.69□□□□□ -1.5
ATG4YNL223W ARF3P40994 183 aaRIP-Chip data5.69□□□□□ -1.5 RIP-Chip
ATG4YNL223W SSU1P41930 458 aa5.69□□□□□ -1.5
ATG4YNL223W PMT4P46971 762 aa5.69□□□□□ -1.5
ATG4YNL223W BNA3P47039 444 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W FAA4P47912 694 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W DCP2P53550 970 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W YNR021WP53723 404 aaKnown RBP5.69□□□□□ -1.5
ATG4YNL223W YDR239CQ03780 787 aa5.69□□□□□ -1.5
ATG4YNL223W SWF1Q04629 336 aa5.69□□□□□ -1.5
ATG4YNL223W RTT10Q08924 1013 aa5.69□□□□□ -1.5
ATG4YNL223W NSI1Q12457 570 aa5.69□□□□□ -1.5
ATG4YNL223W SEC39Q12745 709 aa5.69□□□□□ -1.5
ATG4YNL223W MHF2Q3E829 80 aa5.69□□□□□ -1.5
ATG4YNL223W YMR084WA2P2R3 262 aa5.68□□□□□ -1.5
ATG4YNL223W GAL3P13045 520 aa5.68□□□□□ -1.5
ATG4YNL223W KIN2P13186 1147 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W HOM2P13663 365 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W MSB1P21339 1137 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W POL4P25615 582 aa5.68□□□□□ -1.5
ATG4YNL223W IDH2P28241 369 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W MEI5P32489 222 aa5.68□□□□□ -1.5
ATG4YNL223W PEP12P32854 288 aa5.68□□□□□ -1.5
ATG4YNL223W RIB1P38066 345 aa5.68□□□□□ -1.5
ATG4YNL223W ARA1P38115 344 aa5.68□□□□□ -1.5
ATG4YNL223W RRN10P38204 145 aa5.68□□□□□ -1.5
ATG4YNL223W FMO1P38866 432 aa5.68□□□□□ -1.5
ATG4YNL223W PFS1P38872 237 aa5.68□□□□□ -1.5
ATG4YNL223W BAT1P38891 393 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W RGA1P39083 1007 aa5.68□□□□□ -1.5
ATG4YNL223W MNN9P39107 395 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W TIF34P40217 347 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W ELP2P42935 788 aa5.68□□□□□ -1.5
ATG4YNL223W ATP22P50273 684 aaPredicted RBP5.68□□□□□ -1.5
ATG4YNL223W ERG26P53199 349 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W COS7Q07788 383 aa5.68□□□□□ -1.5
ATG4YNL223W THP1Q08231 455 aa5.68□□□□□ -1.5
ATG4YNL223W GET4Q12125 312 aa5.68□□□□□ -1.5
ATG4YNL223W WTM1Q12363 437 aaKnown RBP5.68□□□□□ -1.5
ATG4YNL223W YOL159C-AQ3E769 90 aa5.68□□□□□ -1.5
ATG4YNL223W ALG7P07286 448 aa5.67□□□□□ -1.5
ATG4YNL223W FBA1P14540 359 aaKnown RBP5.67□□□□□ -1.5
ATG4YNL223W MRPS28P21771 286 aa5.67□□□□□ -1.5
ATG4YNL223W CLB3P24870 427 aa5.67□□□□□ -1.5
ATG4YNL223W NTG1P31378 399 aa5.67□□□□□ -1.5
ATG4YNL223W APE2P32454 952 aaKnown RBP5.67□□□□□ -1.5
ATG4YNL223W PET309P32522 965 aaPredicted RBP5.67□□□□□ -1.5
ATG4YNL223W PET127P32606 800 aa5.67□□□□□ -1.5
ATG4YNL223W YME2P32843 850 aa5.67□□□□□ -1.5
ATG4YNL223W SRX1P36077 127 aa5.67□□□□□ -1.5
ATG4YNL223W SPC34P36131 295 aa5.67□□□□□ -1.5
ATG4YNL223W MET30P39014 640 aa5.67□□□□□ -1.5
ATG4YNL223W DLD3P39976 496 aaKnown RBP5.67□□□□□ -1.5
ATG4YNL223W VRG4P40107 337 aa5.67□□□□□ -1.5
ATG4YNL223W YIL108WP40483 696 aaKnown RBP5.67□□□□□ -1.5
ATG4YNL223W MNT3P40549 630 aa5.67□□□□□ -1.5
ATG4YNL223W GUS1P46655 708 aaKnown RBP RIP-Chip data5.67□□□□□ -1.5not detected
ATG4YNL223W YJL043WP47053 257 aa5.67□□□□□ -1.5
ATG4YNL223W RTS3P53289 263 aa5.67□□□□□ -1.5
ATG4YNL223W IGO1P53897 168 aa5.67□□□□□ -1.5
ATG4YNL223W YPL071CQ02864 156 aa5.67□□□□□ -1.5
ATG4YNL223W ROY1Q04847 553 aa5.67□□□□□ -1.5
ATG4YNL223W YMR226CQ05016 267 aaKnown RBP5.67□□□□□ -1.5
ATG4YNL223W NDL1Q06568 189 aa5.67□□□□□ -1.5
ATG4YNL223W ARR1Q06596 294 aa5.67□□□□□ -1.5
ATG4YNL223W REH1Q06709 432 aa5.67□□□□□ -1.5
ATG4YNL223W LOT6Q07923 191 aa5.67□□□□□ -1.5
ATG4YNL223W YLR111WQ12528 110 aa5.67□□□□□ -1.5
ATG4YNL223W MDM12Q92328 271 aa5.67□□□□□ -1.5
ATG4YNL223W FAB1P34756 2278 aa5.67□□□□□ -1.5
ATG4YNL223W TY1A-DR4O74302 440 aa5.66□□□□□ -1.5
ATG4YNL223W RPS17AP02407 136 aaKnown RBP5.66□□□□□ -1.5
ATG4YNL223W RHO1P06780 209 aaKnown RBP5.66□□□□□ -1.5
ATG4YNL223W COR1P07256 457 aa5.66□□□□□ -1.5
ATG4YNL223W TY1A-HP0C2I4 478 aaKnown RBP5.66□□□□□ -1.5
ATG4YNL223W TY1A-AP0CX57 440 aa5.66□□□□□ -1.5
ATG4YNL223W TY1A-PR1P0CX58 440 aa5.66□□□□□ -1.5
ATG4YNL223W TY1A-ORP0CX59 440 aa5.66□□□□□ -1.5
ATG4YNL223W TY1A-PR2P0CX60 440 aa5.66□□□□□ -1.5
ATG4YNL223W TY1A-DR5P0CX65 440 aa5.66□□□□□ -1.5
Retrieved 100 of 5,963 RNA–protein pairs in 26.8 ms