RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	RSA1	Q08932	381 aa		4.77	□□□□□ -1.65
DOA1	YKL213C	NUS1	Q12063	375 aa		4.77	□□□□□ -1.65
DOA1	YKL213C	APA1	P16550	321 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	URA4	P20051	364 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	SIN4	P32259	974 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	MF(ALPHA)2	P32435	120 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	PHA2	P32452	334 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	SPS19	P32573	292 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	LRG1	P35688	1017 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	STB6	P36085	766 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	YHR078W	P38799	552 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	YHR182W	P38870	785 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	TIM17	P39515	158 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	RCF2	P53721	224 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	DXO1	Q06349	442 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	VPS74	Q06385	345 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	HBT1	Q07653	1046 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	MED2	Q12124	431 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	RTR2	Q12378	196 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	HMS1	Q12398	434 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	ABF1	P14164	731 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	THR1	P17423	357 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	PRP4	P20053	465 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	CRM1	P30822	1084 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	CCR4	P31384	837 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	PET309	P32522	965 aa	Predicted RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	RML2	P32611	393 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	PRP18	P33411	251 aa	Predicted RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	YKR015C	P36111	568 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	YBR071W	P38243	211 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	TDP1	P38319	544 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	LSM12	P38828	187 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	BAT1	P38891	393 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	OAF1	P39720	1047 aa	Predicted RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	PFK26	P40433	827 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	SNL1	P40548	159 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	IRC6	P43615	237 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	LSM1	P47017	172 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	PET130	P47065	347 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	GNP1	P48813	663 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	SWC4	P53201	476 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	CWC25	P53854	179 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	OSH6	Q02201	448 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	RNY1	Q02933	434 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	HPT1	Q04178	221 aa	Known RBP	4.76	□□□□□ -1.65
DOA1	YKL213C	BOP2	Q06150	570 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	SPE4	Q12455	300 aa		4.76	□□□□□ -1.65
DOA1	YKL213C	STE12	P13574	688 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	EPT1	P22140	391 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	TPO5	P36029	618 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SRX1	P36077	127 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	TAE1	P38340	232 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	PHO89	P38361	574 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	DBP8	P38719	431 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	PCL5	P38794	229 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	FRT2	P39734	528 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	YJL068C	P40363	299 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SLM1	P40485	686 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	MTO1	P53070	669 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	BOL2	P53082	120 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SLX9	P53251	210 aa	Predicted RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	REC102	Q02721	264 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	CSN9	Q03981	162 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	BLS1	Q06071	122 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SPO77	Q06134	477 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	YLR345W	Q06137	509 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	VTA1	Q06263	330 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	BCP1	Q06338	283 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	OPI10	Q08202	246 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	MRH1	Q12117	320 aa	Predicted RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	BBP1	Q12365	385 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	PAR32	Q12515	295 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	Q0182	Q9ZZW1	134 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SEM1	O94742	89 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	CYT1	P07143	309 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	CHL1	P22516	861 aa	Predicted RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	CMK1	P27466	446 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	MCM5	P29496	775 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	SUR1	P33300	382 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SQT1	P35184	431 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	RIM2	P38127	377 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	MUP3	P38734	546 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	GDI1	P39958	451 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	CAB2	P40506	365 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	QRI1	P43123	477 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	UPF3	P48412	387 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	MAL11	P53048	616 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	PRO2	P54885	456 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	SWP1	Q02795	286 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	URC2	Q04411	772 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	MLC2	Q06580	163 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
DOA1	YKL213C	ATG10	Q07879	167 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	SAM4	Q08985	325 aa	Known RBP	4.75	□□□□□ -1.65
DOA1	YKL213C	UBX3	Q12229	455 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	ICT1	Q12385	394 aa		4.75	□□□□□ -1.65
DOA1	YKL213C	TEL1	P38110	2787 aa		4.74	□□□□□ -1.65
DOA1	YKL213C	SUC2	P00724	532 aa		4.74	□□□□□ -1.65
DOA1	YKL213C	CPA1	P07258	411 aa	Known RBP	4.74	□□□□□ -1.65
DOA1	YKL213C	SEC53	P07283	254 aa	Known RBP	4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 14.9 ms