RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	KIN82	P25341	720 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	FEN2	P25621	512 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	CDC20	P26309	610 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	MCM4	P30665	933 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	HIR2	P32480	875 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	PPS1	P38148	807 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	YHR210C	P38893	341 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	COX18	P53239	316 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	YNL092W	P53934	400 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	YAT1	P80235	687 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	RLI1	Q03195	608 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	CAB5	Q03941	241 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	ATC1	Q04005	294 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	RRB1	Q04225	511 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	RRG8	Q06109	277 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	CRN1	Q06440	651 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	YPR078C	Q06813	372 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	AEP3	Q12089	606 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	TIP41	Q12199	356 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.64	□□□□□ -1.83	not detected
NUP85	YJR042W	PAA1	Q12447	191 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	YPT1	P01123	206 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	SEC15	P22224	910 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	ADY2	P25613	283 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	RPS5	P26783	225 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	FRE1	P32791	686 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	EMP70	P32802	667 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	NTR2	P36118	322 aa	Predicted RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	MRPL7	P36519	292 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	GDT1	P38301	280 aa	Predicted RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	PEX7	P39108	375 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	TOS3	P43637	560 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	CTH1	P47976	325 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	MSY1	P48527	492 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	VPS73	P53142	486 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	WAR1	Q03631	944 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	MRI1	Q06489	411 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	TSR1	Q07381	788 aa	Known RBP	3.64	□□□□□ -1.83
NUP85	YJR042W	AIM41	Q12032	185 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	HMI1	Q12039	706 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	YBR255C-A	Q3E776	120 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	SRN2	Q99176	213 aa		3.64	□□□□□ -1.83
NUP85	YJR042W	MF(ALPHA)1	P01149	165 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	MSS116	P15424	664 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	VPS34	P22543	875 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	AMD2	P22580	549 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	YUR1	P26725	428 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	CWP1	P28319	239 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	MVD1	P32377	396 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	YBR144C	P34215	104 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	BMH2	P34730	273 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	YHR182W	P38870	785 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	YRB2	P40517	327 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	IDS2	P46958	469 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	BRO1	P48582	844 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	RMR1	P53060	241 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	ARI1	P53111	347 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	DRN1	P53255	507 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	HST3	P53687	447 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	UBP2	Q01476	1272 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	RPS15	Q01855	142 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	YMR265C	Q03508	461 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	FUS2	Q05670	677 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	CTS2	Q06350	511 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	OPT2	Q06593	877 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	VAM3	Q12241	283 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	ALG1	P16661	449 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	YPK2	P18961	677 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	CKA2	P19454	339 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	ADH7	P25377	361 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	GID7	P25569	745 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	APL1	P27351	700 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	RAD23	P32628	398 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	BCS1	P32839	456 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	MAK5	P38112	773 aa	Predicted RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	SAF1	P38352	637 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	YAR1	P46683	200 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	URB2	P47108	1174 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	CAF130	P53280	1122 aa	Predicted RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	BET4	Q00618	327 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	MFM1	Q02783	413 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	ENT5	Q03769	411 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	TY1A-MR1	Q04215	440 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	YMR130W	Q04223	302 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	RRP45	Q05636	305 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	DCS1	Q06151	350 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	BSC6	Q08280	497 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	RKM1	Q08961	583 aa	Predicted RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	NCE102	Q12207	173 aa	RIP-Chip data	3.63	□□□□□ -1.83	not detected
NUP85	YJR042W	MDM20	Q12387	796 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	AIM45	Q12480	344 aa	Known RBP	3.63	□□□□□ -1.83
NUP85	YJR042W	LAG2	Q92325	660 aa		3.63	□□□□□ -1.83
NUP85	YJR042W	SEC12	P11655	471 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	CDC15	P27636	974 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	BEM1	P29366	551 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	PSO2	P30620	661 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	ZIP1	P31111	875 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	OCT1	P35999	772 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	YBR259W	P38338	688 aa		3.62	□□□□□ -1.83
NUP85	YJR042W	SDH8	P38345	138 aa		3.62	□□□□□ -1.83

Retrieved 100 of 5,963 RNA–protein pairs in 20.6 ms