RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	LAS17	Q12446	633 aa		5.09	□□□□□ -1.59
UBP9	YER098W	YJR112W-A	Q3E743	109 aa		5.09	□□□□□ -1.59
UBP9	YER098W	MRP13	P12686	339 aa		5.08	□□□□□ -1.6
UBP9	YER098W	VPS3	P23643	1011 aa		5.08	□□□□□ -1.6
UBP9	YER098W	MGM1	P32266	881 aa		5.08	□□□□□ -1.6
UBP9	YER098W	CLG1	P35190	452 aa		5.08	□□□□□ -1.6
UBP9	YER098W	GLG1	P36143	616 aa		5.08	□□□□□ -1.6
UBP9	YER098W	UTP30	P36144	274 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	YKR073C	P36153	106 aa		5.08	□□□□□ -1.6
UBP9	YER098W	APE3	P37302	537 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	CCL1	P37366	393 aa		5.08	□□□□□ -1.6
UBP9	YER098W	VMA7	P39111	118 aa		5.08	□□□□□ -1.6
UBP9	YER098W	SEC24	P40482	926 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	PHB1	P40961	287 aa		5.08	□□□□□ -1.6
UBP9	YER098W	IMD3	P50095	523 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	INA17	Q02888	182 aa		5.08	□□□□□ -1.6
UBP9	YER098W	PEX25	Q02969	394 aa		5.08	□□□□□ -1.6
UBP9	YER098W	YDR132C	Q03900	495 aa		5.08	□□□□□ -1.6
UBP9	YER098W	ARR2	Q06597	130 aa		5.08	□□□□□ -1.6
UBP9	YER098W	SPE3	Q12074	293 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	PEX3	P28795	441 aa		5.08	□□□□□ -1.6
UBP9	YER098W	TPS2	P31688	896 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	NUP2	P32499	720 aa		5.08	□□□□□ -1.6
UBP9	YER098W	SRB5	P32585	307 aa		5.08	□□□□□ -1.6
UBP9	YER098W	MMS21	P38632	267 aa		5.08	□□□□□ -1.6
UBP9	YER098W	MTG2	P38860	518 aa		5.08	□□□□□ -1.6
UBP9	YER098W	FRT2	P39734	528 aa		5.08	□□□□□ -1.6
UBP9	YER098W	ZIM17	P42844	174 aa		5.08	□□□□□ -1.6
UBP9	YER098W	GPI8	P49018	411 aa		5.08	□□□□□ -1.6
UBP9	YER098W	YGL138C	P53122	345 aa		5.08	□□□□□ -1.6
UBP9	YER098W	YTP1	P53584	459 aa		5.08	□□□□□ -1.6
UBP9	YER098W	IPI3	P53877	555 aa		5.08	□□□□□ -1.6
UBP9	YER098W	MRPL22	P53881	309 aa		5.08	□□□□□ -1.6
UBP9	YER098W	RPS15	Q01855	142 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	OAZ1	Q02803	292 aa		5.08	□□□□□ -1.6
UBP9	YER098W	YMR226C	Q05016	267 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	DXO1	Q06349	442 aa		5.08	□□□□□ -1.6
UBP9	YER098W	CUE5	Q08412	411 aa	Known RBP	5.08	□□□□□ -1.6
UBP9	YER098W	FRE5	Q08908	694 aa		5.08	□□□□□ -1.6
UBP9	YER098W	SNF4	P12904	322 aa		5.07	□□□□□ -1.6
UBP9	YER098W	GRX2	P17695	143 aa	Known RBP	5.07	□□□□□ -1.6
UBP9	YER098W	ISY1	P21374	235 aa	Predicted RBP	5.07	□□□□□ -1.6
UBP9	YER098W	RNR3	P21672	869 aa	Known RBP	5.07	□□□□□ -1.6
UBP9	YER098W	RRP7	P25368	297 aa	Predicted RBP	5.07	□□□□□ -1.6
UBP9	YER098W	RFA2	P26754	273 aa	Known RBP	5.07	□□□□□ -1.6
UBP9	YER098W	YBR285W	P38354	144 aa		5.07	□□□□□ -1.6
UBP9	YER098W	CCT6	P39079	546 aa		5.07	□□□□□ -1.6
UBP9	YER098W	MEP1	P40260	492 aa		5.07	□□□□□ -1.6
UBP9	YER098W	MAF1	P41910	395 aa		5.07	□□□□□ -1.6
UBP9	YER098W	UBC11	P52492	156 aa		5.07	□□□□□ -1.6
UBP9	YER098W	HOS2	P53096	452 aa	Predicted RBP	5.07	□□□□□ -1.6
UBP9	YER098W	YGR066C	P53242	292 aa		5.07	□□□□□ -1.6
UBP9	YER098W	YGR079W	P53249	370 aa		5.07	□□□□□ -1.6
UBP9	YER098W	COG5	P53951	403 aa		5.07	□□□□□ -1.6
UBP9	YER098W	SPC2	Q04969	178 aa		5.07	□□□□□ -1.6
UBP9	YER098W	THI20	Q08224	551 aa		5.07	□□□□□ -1.6
UBP9	YER098W	VPS54	Q12071	889 aa		5.07	□□□□□ -1.6
UBP9	YER098W	ARP6	Q12509	438 aa		5.07	□□□□□ -1.6
UBP9	YER098W	YER175W-A	Q8TGU4	54 aa		5.07	□□□□□ -1.6
UBP9	YER098W	YBR085C-A	O43137	85 aa		5.07	□□□□□ -1.6
UBP9	YER098W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	5.07	□□□□□ -1.6	not detected
UBP9	YER098W	PDE1	P22434	369 aa		5.07	□□□□□ -1.6
UBP9	YER098W	MAK31	P23059	88 aa		5.07	□□□□□ -1.6
UBP9	YER098W	TFC1	P32367	649 aa		5.07	□□□□□ -1.6
UBP9	YER098W	CTP1	P38152	299 aa		5.07	□□□□□ -1.6
UBP9	YER098W	VID24	P38263	362 aa		5.07	□□□□□ -1.6
UBP9	YER098W	SMF2	P38778	549 aa		5.07	□□□□□ -1.6
UBP9	YER098W	HPM1	P40481	377 aa		5.07	□□□□□ -1.6
UBP9	YER098W	SPT20	P50875	604 aa		5.07	□□□□□ -1.6
UBP9	YER098W	FHN1	P53279	174 aa		5.07	□□□□□ -1.6
UBP9	YER098W	ARX1	Q03862	593 aa	Known RBP	5.07	□□□□□ -1.6
UBP9	YER098W	DLT1	Q04216	342 aa		5.07	□□□□□ -1.6
UBP9	YER098W	PEX10	Q05568	337 aa		5.07	□□□□□ -1.6
UBP9	YER098W	IRC13	Q08630	104 aa		5.07	□□□□□ -1.6
UBP9	YER098W	ACF2	Q12168	779 aa		5.07	□□□□□ -1.6
UBP9	YER098W	LDB17	Q12342	491 aa		5.07	□□□□□ -1.6
UBP9	YER098W	CAF20	P12962	161 aa	Known RBP	5.06	□□□□□ -1.6
UBP9	YER098W	RPB4	P20433	221 aa	Predicted RBP	5.06	□□□□□ -1.6
UBP9	YER098W	MUD1	P32605	298 aa	Known RBP	5.06	□□□□□ -1.6
UBP9	YER098W	PHO11	P35842	467 aa		5.06	□□□□□ -1.6
UBP9	YER098W	PHO12	P38693	467 aa		5.06	□□□□□ -1.6
UBP9	YER098W	LNP1	P38878	278 aa		5.06	□□□□□ -1.6
UBP9	YER098W	AFG3	P39925	761 aa		5.06	□□□□□ -1.6
UBP9	YER098W	YMR134W	P40207	237 aa		5.06	□□□□□ -1.6
UBP9	YER098W	YRB2	P40517	327 aa		5.06	□□□□□ -1.6
UBP9	YER098W	MSS2	P40990	351 aa		5.06	□□□□□ -1.6
UBP9	YER098W	THI6	P41835	540 aa		5.06	□□□□□ -1.6
UBP9	YER098W	BPL1	P48445	690 aa	Predicted RBP	5.06	□□□□□ -1.6
UBP9	YER098W	NMA2	P53204	395 aa		5.06	□□□□□ -1.6
UBP9	YER098W	LOT6	Q07923	191 aa		5.06	□□□□□ -1.6
UBP9	YER098W	ESC8	Q08119	714 aa		5.06	□□□□□ -1.6
UBP9	YER098W	RAX1	Q08760	435 aa		5.06	□□□□□ -1.6
UBP9	YER098W	HSP42	Q12329	375 aa		5.06	□□□□□ -1.6
UBP9	YER098W	FMP16	Q12497	93 aa		5.06	□□□□□ -1.6
UBP9	YER098W	YBR255C-A	Q3E776	120 aa		5.06	□□□□□ -1.6
UBP9	YER098W	ISN1	Q99312	450 aa		5.06	□□□□□ -1.6
UBP9	YER098W	RHO1	P06780	209 aa	Known RBP	5.06	□□□□□ -1.6
UBP9	YER098W	SAC1	P32368	623 aa	Known RBP	5.06	□□□□□ -1.6
UBP9	YER098W	UGP1	P32861	499 aa	Known RBP	5.06	□□□□□ -1.6
UBP9	YER098W	YPK3	P38070	525 aa		5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms