RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	LHP1	P33399	275 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	CTF13	P35203	478 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	KSP1	P38691	1029 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	MNL1	P38888	796 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	STT3	P39007	718 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	KRE29	P40026	464 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	PCL6	P40038	420 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	TMA108	P40462	946 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	HXT14	P42833	540 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SKP2	P42843	763 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RGD2	P43556	714 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	MNN5	P46982	586 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RTT101	P47050	842 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	HOC1	P47124	396 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DSD1	P53095	428 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RIM8	P53179	542 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	PIB2	P53191	635 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	BRE5	P53741	515 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
PRP28	YDR243C	DAK1	P54838	584 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	PEX25	Q02969	394 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DIG1	Q03063	452 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	GIM5	Q04493	163 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	CDA2	Q06703	312 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SLD7	Q08457	257 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	FYV7	Q12247	151 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	PGA3	Q12746	312 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	NCB2	Q92317	146 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	MDM12	Q92328	271 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SAS5	Q99314	248 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	NUP192	P47054	1683 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	MRP10	O75012	95 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	CDC28	P00546	298 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	HTB1	P02293	131 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	HTB2	P02294	131 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YFR010W-A	P0C5N0	62 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	AAT2	P23542	418 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	HCM1	P25364	564 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	CHA1	P25379	360 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	SHP1	P34223	423 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	AIM29	P36154	155 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	ECM13	P38195	257 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	MMS4	P38257	691 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YHR054C	P38780	354 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	VPS45	P38932	577 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DUN1	P39009	513 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YIL165C	P40446	119 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YKE4	P40544	346 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DOT5	P40553	215 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	CFD1	P40558	293 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DAK2	P43550	591 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SAD1	P43589	448 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	DUG1	P43616	481 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	LOH1	P47055	219 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	MPS3	P47069	682 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	AMA1	P50082	593 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YML6	P51998	286 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	COS12	P53053	380 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	NSA1	P53136	463 aa	Predicted RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	YGR127W	P53275	312 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SOK2	P53438	785 aa	Predicted RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	RPT4	P53549	437 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	YNR014W	P53719	212 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	YNL010W	P53981	241 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	ERV25	P54837	211 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	PFA5	Q03289	374 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RMT2	Q03305	412 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SIZ1	Q04195	904 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	EMG1	Q06287	252 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	ESF1	Q06344	628 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	YPR147C	Q06522	304 aa	Known RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	REH1	Q06709	432 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RTK1	Q12100	620 aa	Predicted RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	TPK2	P06245	380 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	PHO4	P07270	312 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	RPS18A	P0CX55	146 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	RPS18B	P0CX56	146 aa	Predicted RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	BAR1	P12630	587 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	YPK1	P12688	680 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	UGA1	P17649	471 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	MRPL44	P19956	98 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	RNR1	P21524	888 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	DAL81	P21657	970 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	MIR1	P23641	311 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	IMG1	P25626	169 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	CDC50	P25656	391 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	LDS1	P31379	325 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	UTR4	P32626	227 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	BEM3	P32873	1128 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	YBR056W	P38081	501 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	ECM2	P38241	364 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	FTH1	P38310	465 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	YBR259W	P38338	688 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	RRP4	P38792	359 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	LSM4	P40070	187 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	ATM1	P40416	690 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	THI6	P41835	540 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	LYS20	P48570	428 aa	Known RBP	4.34	□□□□□ -1.71
PRP28	YDR243C	SLD3	P53135	668 aa		4.34	□□□□□ -1.71
PRP28	YDR243C	TEP1	P53916	434 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 51.9 ms