RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C TIM18Q08749 192 aa1.78□□□□□ -2.12
PCF11YDR228C MUM3Q08750 479 aa1.78□□□□□ -2.12
PCF11YDR228C TRP1P00912 224 aa1.77□□□□□ -2.13
PCF11YDR228C CYC3P06182 269 aa1.77□□□□□ -2.13
PCF11YDR228C RHO2P06781 192 aa1.77□□□□□ -2.13
PCF11YDR228C MID2P36027 376 aa1.77□□□□□ -2.13
PCF11YDR228C YEL057CP39983 233 aa1.77□□□□□ -2.13
PCF11YDR228C GAB1P41733 394 aa1.77□□□□□ -2.13
PCF11YDR228C SSU1P41930 458 aa1.77□□□□□ -2.13
PCF11YDR228C LAM5P43560 674 aa1.77□□□□□ -2.13
PCF11YDR228C PPM1Q04081 328 aa1.77□□□□□ -2.13
PCF11YDR228C YDR056CQ12025 205 aa1.77□□□□□ -2.13
PCF11YDR228C YPR022CQ12139 1133 aa1.77□□□□□ -2.13
PCF11YDR228C PKH2Q12236 1081 aaKnown RBP1.77□□□□□ -2.13
PCF11YDR228C PRP21P32524 280 aaPredicted RBP1.77□□□□□ -2.13
PCF11YDR228C ECM25P32525 599 aa1.77□□□□□ -2.13
PCF11YDR228C TWF1P53250 332 aa1.77□□□□□ -2.13
PCF11YDR228C ARE2P53629 642 aaKnown RBP1.77□□□□□ -2.13
PCF11YDR228C YNR048WP53740 393 aa1.77□□□□□ -2.13
PCF11YDR228C RTP1Q12751 981 aa1.77□□□□□ -2.13
PCF11YDR228C NUP2P32499 720 aa1.76□□□□□ -2.13
PCF11YDR228C KKQ8P36004 724 aa1.76□□□□□ -2.13
PCF11YDR228C PCP1P53259 346 aa1.76□□□□□ -2.13
PCF11YDR228C RNY1Q02933 434 aaKnown RBP1.76□□□□□ -2.13
PCF11YDR228C FOB1O13329 566 aa1.75□□□□□ -2.13
PCF11YDR228C SEC63P14906 663 aa1.75□□□□□ -2.13
PCF11YDR228C SPB1P25582 841 aaPredicted RBP1.75□□□□□ -2.13
PCF11YDR228C UTP18P40362 594 aaPredicted RBP1.75□□□□□ -2.13
PCF11YDR228C HSP31Q04432 237 aa1.75□□□□□ -2.13
PCF11YDR228C IMH1Q06704 911 aaKnown RBP1.75□□□□□ -2.13
PCF11YDR228C IRC25Q07951 179 aa1.75□□□□□ -2.13
PCF11YDR228C CUE5Q08412 411 aaKnown RBP1.75□□□□□ -2.13
PCF11YDR228C YBL111CQ3E7Y5 667 aa1.75□□□□□ -2.13
PCF11YDR228C SLY1P22213 666 aa1.75□□□□□ -2.13
PCF11YDR228C RAD14P28519 371 aa1.75□□□□□ -2.13
PCF11YDR228C NIP100P33420 868 aa1.75□□□□□ -2.13
PCF11YDR228C YJR085CP47131 105 aaKnown RBP1.75□□□□□ -2.13
PCF11YDR228C ECM27P47144 725 aa1.75□□□□□ -2.13
PCF11YDR228C YGR149WP48236 432 aa1.75□□□□□ -2.13
PCF11YDR228C FRE4P53746 719 aa1.75□□□□□ -2.13
PCF11YDR228C YDR387CQ04162 555 aa1.75□□□□□ -2.13
PCF11YDR228C SNX3Q08826 162 aaKnown RBP1.75□□□□□ -2.13
PCF11YDR228C PLP2Q12017 286 aa1.75□□□□□ -2.13
PCF11YDR228C GCN4P03069 281 aa1.74□□□□□ -2.13
PCF11YDR228C POP5P28005 173 aa1.74□□□□□ -2.13
PCF11YDR228C AFG1P32317 509 aa1.74□□□□□ -2.13
PCF11YDR228C CMC1P36064 111 aa1.74□□□□□ -2.13
PCF11YDR228C CST26P38226 397 aa1.74□□□□□ -2.13
PCF11YDR228C RMD9P53140 646 aaKnown RBP1.74□□□□□ -2.13
PCF11YDR228C SYF1Q04048 859 aaPredicted RBP1.74□□□□□ -2.13
PCF11YDR228C RMD5Q12508 421 aa1.74□□□□□ -2.13
PCF11YDR228C ENT1Q12518 454 aa1.74□□□□□ -2.13
PCF11YDR228C HIS4P00815 799 aaKnown RBP1.73□□□□□ -2.13
PCF11YDR228C TEF1P02994 458 aaKnown RBP1.73□□□□□ -2.13
PCF11YDR228C REC114P32841 428 aa1.73□□□□□ -2.13
PCF11YDR228C MRPL10P36520 322 aa1.73□□□□□ -2.13
PCF11YDR228C RFC3P38629 340 aa1.73□□□□□ -2.13
PCF11YDR228C DOT5P40553 215 aa1.73□□□□□ -2.13
PCF11YDR228C VTC2P43585 828 aa1.73□□□□□ -2.13
PCF11YDR228C RTS3P53289 263 aa1.73□□□□□ -2.13
PCF11YDR228C DSL1P53847 754 aa1.73□□□□□ -2.13
PCF11YDR228C JJJ1P53863 590 aa1.73□□□□□ -2.13
PCF11YDR228C YDR239CQ03780 787 aa1.73□□□□□ -2.13
PCF11YDR228C SGT1Q08446 395 aa1.73□□□□□ -2.13
PCF11YDR228C ORT1Q12375 292 aa1.73□□□□□ -2.13
PCF11YDR228C RIP1P08067 215 aa1.73□□□□□ -2.13
PCF11YDR228C MET8P15807 274 aa1.73□□□□□ -2.13
PCF11YDR228C OCA4P25366 362 aa1.73□□□□□ -2.13
PCF11YDR228C MUD1P32605 298 aaKnown RBP1.73□□□□□ -2.13
PCF11YDR228C AIM10P39965 576 aaKnown RBP1.73□□□□□ -2.13
PCF11YDR228C VID27P40157 782 aa1.73□□□□□ -2.13
PCF11YDR228C SVL3Q03088 825 aaKnown RBP1.73□□□□□ -2.13
PCF11YDR228C ATG29Q12092 213 aa1.73□□□□□ -2.13
PCF11YDR228C YLR278CQ05854 1341 aa1.72□□□□□ -2.13
PCF11YDR228C ARG4P04076 463 aaPredicted RBP1.72□□□□□ -2.13
PCF11YDR228C NPL6P32832 435 aa1.72□□□□□ -2.13
PCF11YDR228C CSE2P33308 149 aa1.72□□□□□ -2.13
PCF11YDR228C PMT1P33775 817 aa1.72□□□□□ -2.13
PCF11YDR228C VID24P38263 362 aa1.72□□□□□ -2.13
PCF11YDR228C YHR131CP38835 850 aa1.72□□□□□ -2.13
PCF11YDR228C LYS1P38998 373 aaRIP-Chip data1.72□□□□□ -2.13not detected
PCF11YDR228C MET18P40469 1032 aa1.72□□□□□ -2.13
PCF11YDR228C SAS2P40963 338 aa1.72□□□□□ -2.13
PCF11YDR228C IOC4Q04213 475 aa1.72□□□□□ -2.13
PCF11YDR228C RQC1Q05468 723 aaKnown RBP1.72□□□□□ -2.13
PCF11YDR228C CCH1P50077 2039 aa1.72□□□□□ -2.13
PCF11YDR228C GPH1P06738 902 aaKnown RBP1.71□□□□□ -2.14
PCF11YDR228C CTR86P25355 563 aa1.71□□□□□ -2.14
PCF11YDR228C IMP2'P32351 346 aa1.71□□□□□ -2.14
PCF11YDR228C APE2P32454 952 aaKnown RBP1.71□□□□□ -2.14
PCF11YDR228C JLP2P40206 208 aa1.71□□□□□ -2.14
PCF11YDR228C SPO22P40511 975 aa1.71□□□□□ -2.14
PCF11YDR228C HXT14P42833 540 aa1.71□□□□□ -2.14
PCF11YDR228C RMD8P43620 662 aa1.71□□□□□ -2.14
PCF11YDR228C GIR2Q03768 265 aaPredicted RBP1.71□□□□□ -2.14
PCF11YDR228C SKI7Q08491 747 aaPredicted RBP1.71□□□□□ -2.14
PCF11YDR228C AHC1Q12433 566 aa1.71□□□□□ -2.14
PCF11YDR228C TOP1P04786 769 aa1.71□□□□□ -2.14
PCF11YDR228C SPS4P09937 338 aa1.71□□□□□ -2.14
PCF11YDR228C RAD57P25301 460 aa1.71□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms