RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 PTK7Q13308 1070 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 MYSM1Q5VVJ2 828 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 SPRED2Q7Z698 418 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 TMCO2Q7Z6W1 182 aaPredicted RBP27.63■■■□□ 2.01
CPSF1-214ENST00000622776 VSIG10LQ86VR7 867 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 SAMD3Q8N6K7 520 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 NECAB3Q96P71 396 aaPredicted RBP27.63■■■□□ 2.01
CPSF1-214ENST00000622776 ZBED2Q9BTP6 218 aa27.63■■■□□ 2.01
CPSF1-214ENST00000622776 LCHNA4D1U4 455 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 COL9A1P20849 921 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 HOXA13P31271 388 aaPredicted RBP27.62■■■□□ 2.01
CPSF1-214ENST00000622776 DEFB103AP81534 67 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 GRB10Q13322 594 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 TRIM71Q2Q1W2 868 aaKnown RBP27.62■■■□□ 2.01
CPSF1-214ENST00000622776 KCNV1Q6PIU1 500 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 PTPRSQ13332 1948 aa27.62■■■□□ 2.01
CPSF1-214ENST00000622776 ABHD14A-ACY1A0A1B0GW23 586 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 KCNQ1P51787 676 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 ZNF200P98182 395 aaPredicted RBP27.61■■■□□ 2.01
CPSF1-214ENST00000622776 PGM5Q15124 567 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 SLC35G1Q2M3R5 365 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 TCTN1Q2MV58 587 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 CELF3Q5SZQ8 465 aaKnown RBP27.61■■■□□ 2.01
CPSF1-214ENST00000622776 IL31RAQ8NI17 732 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 SPATA33Q96N06 139 aa27.61■■■□□ 2.01
CPSF1-214ENST00000622776 SORBS3O60504 671 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 LPXNO60711 386 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 GGPS1O95749 300 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 TRDNQ13061 729 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 HSDL1Q3SXM5 330 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 ZNF618Q5T7W0 954 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 TRAF7Q6Q0C0 670 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 HOMER1Q86YM7 354 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 WNT8BQ93098 351 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 COG5Q9UP83 839 aa27.6■■■□□ 2.01
CPSF1-214ENST00000622776 XIRP2A4UGR9 3374 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 TGFB3P10600 412 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 TRAF1Q13077 416 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 GRM4Q14833 912 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 PIGSQ96S52 555 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 RIOX1Q9H6W3 641 aa27.59■■■□□ 2.01
CPSF1-214ENST00000622776 GCOM1H8Y6P7 765 aaPredicted RBP27.58■■■□□ 2.01
CPSF1-214ENST00000622776 EFCAB14O75071 495 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 GJB5O95377 273 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 POLR2MP0CAP2 368 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 UBA1P22314 1058 aaKnown RBP27.58■■■□□ 2.01
CPSF1-214ENST00000622776 SP2Q02086 613 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 IKBKEQ14164 716 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 HIC1Q14526 733 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 MBTPS1Q14703 1052 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 RAD9AQ99638 391 aa27.58■■■□□ 2.01
CPSF1-214ENST00000622776 IFIT3O14879 490 aaKnown RBP27.57■■■□□ 2
CPSF1-214ENST00000622776 CCND2P30279 289 aa27.57■■■□□ 2
CPSF1-214ENST00000622776 FCHSD1Q86WN1 690 aa27.57■■■□□ 2
CPSF1-214ENST00000622776 ZFP91Q96JP5 570 aaPredicted RBP27.57■■■□□ 2
CPSF1-214ENST00000622776 YTHDC1Q96MU7 727 aaKnown RBP27.57■■■□□ 2
CPSF1-214ENST00000622776 CYP21A2P08686 494 aa27.56■■■□□ 2
CPSF1-214ENST00000622776 GSPT1P15170 499 aaKnown RBP27.56■■■□□ 2
CPSF1-214ENST00000622776 PDE4AP27815 886 aa27.56■■■□□ 2
CPSF1-214ENST00000622776 GPKOWQ92917 476 aaPredicted RBP eCLIP27.56■■■□□ 2
CPSF1-214ENST00000622776 C16orf70Q9BSU1 422 aa27.56■■■□□ 2
CPSF1-214ENST00000622776 MLXIPQ9HAP2 919 aa27.56■■■□□ 2
CPSF1-214ENST00000622776 SENP2Q9HC62 589 aa27.56■■■□□ 2
CPSF1-214ENST00000622776 U3KPZ7 1027 aaPredicted RBP27.56■■■□□ 2
CPSF1-214ENST00000622776 RBAK-RBAKDNI3L0D1 243 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 CYTH3O43739 400 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 LGR5O75473 907 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 TTC22Q5TAA0 569 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 SERINC5Q86VE9 423 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 GDPD5Q8WTR4 605 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 HLA-CQ95604 372 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 LMCD1Q9NZU5 365 aa27.55■■■□□ 2
CPSF1-214ENST00000622776 PNMA6FA0A0J9YX94 578 aa27.54■■■□□ 2
CPSF1-214ENST00000622776 ERICH2A1L162 156 aa27.54■■■□□ 2
CPSF1-214ENST00000622776 PTH1RQ03431 593 aa27.54■■■□□ 2
CPSF1-214ENST00000622776 TGS1Q96RS0 853 aaKnown RBP27.54■■■□□ 2
CPSF1-214ENST00000622776 EMSYQ7Z589 1322 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 LINC01553A4QN01 128 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 THPOP40225 353 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 ERVK-21P61565 698 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 TROAPQ12815 778 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 WTAPQ15007 396 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 FAM117BQ6P1L5 589 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 RUFY2Q8WXA3 655 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 BCAS3Q9H6U6 928 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 SUGCTQ9HAC7 445 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 MTUS1Q9ULD2 1270 aa27.53■■■□□ 2
CPSF1-214ENST00000622776 C17orf102A2RUQ5 167 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 RSPH10B2B2RC85 870 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 H3BRB1 525 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 RSPH10BP0C881 870 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 RALYLQ86SE5 291 aaKnown RBP27.52■■■□□ 2
CPSF1-214ENST00000622776 DBF4BQ8NFT6 615 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 TUT1Q9H6E5 874 aaKnown RBP27.52■■■□□ 2
CPSF1-214ENST00000622776 RAPGEFL1Q9UHV5 662 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 TAF6LQ9Y6J9 622 aa27.52■■■□□ 2
CPSF1-214ENST00000622776 LGALS2P05162 132 aa27.51■■□□□ 1.99
CPSF1-214ENST00000622776 CHMLP26374 656 aa27.51■■□□□ 1.99
CPSF1-214ENST00000622776 SART3Q15020 963 aaKnown RBP27.51■■□□□ 1.99
CPSF1-214ENST00000622776 GNPTABQ3T906 1256 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms