RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CDKL5O76039 1030 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 GGPS1O95749 300 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 SREBF1P36956 1147 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 MLLT1Q03111 559 aaPredicted RBP15.42■□□□□ 0.06
LINC00540-202ENST00000616974 TTLL4Q14679 1199 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 BLIDQ8IZY5 108 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 RBM27Q9P2N5 1060 aaKnown RBP15.42■□□□□ 0.06
LINC00540-202ENST00000616974 UBIAD1Q9Y5Z9 338 aa15.42■□□□□ 0.06
LINC00540-202ENST00000616974 LOC102724159A0A0B4J2E5 919 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 PWP2Q15269 919 aaKnown RBP15.41■□□□□ 0.06
LINC00540-202ENST00000616974 CYFIP1Q7L576 1253 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 NECAB2Q7Z6G3 386 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 SAMD3Q8N6K7 520 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 SH3GLB2Q9NR46 395 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 MYH9P35579 1960 aaKnown RBP15.41■□□□□ 0.06
LINC00540-202ENST00000616974 IGLV3-22A0A075B6J6 115 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 BTBD18B2RXH4 712 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 ZNF286BP0CG31 522 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 INF2Q27J81 1249 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 MYSM1Q5VVJ2 828 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 KRT40Q6A162 431 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 RNF180Q86T96 592 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 CCDC148Q8NFR7 591 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 TBCKQ8TEA7 893 aa15.41■□□□□ 0.06
LINC00540-202ENST00000616974 SPATA31C2B4DYI2 1134 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 KIF28PB7ZC32 967 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 TDP2O95551 362 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 KCNA2P16389 499 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 CHMP4BP1P59074 171 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 ITGB3BPQ13352 177 aaPredicted RBP15.4■□□□□ 0.06
LINC00540-202ENST00000616974 TRIM50Q86XT4 487 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 ANKLE1Q8NAG6 615 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 PRUNE2Q8WUY3 3088 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 TNFRSF25Q93038 417 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 LENG9Q96B70 501 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 ZSCAN31Q96LW9 406 aaPredicted RBP15.4■□□□□ 0.06
LINC00540-202ENST00000616974 MAF1Q9H063 256 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 SH2B1Q9NRF2 756 aaPredicted RBP15.4■□□□□ 0.06
LINC00540-202ENST00000616974 KCNH7Q9NS40 1196 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 PHF24Q9UPV7 400 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 TET1Q8NFU7 2136 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 KBTBD13C9JR72 458 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 GNA11P29992 359 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 ARRDC4Q8NCT1 418 aa15.4■□□□□ 0.06
LINC00540-202ENST00000616974 COL6A3P12111 3177 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 A6NJR5 290 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 MMP3P08254 477 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 SYN1P17600 705 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 CST5P28325 142 aaPredicted RBP15.39■□□□□ 0.05
LINC00540-202ENST00000616974 AP3B2Q13367 1082 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 MTMR1Q13613 665 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 TRIM60Q495X7 471 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 CELF3Q5SZQ8 465 aaKnown RBP15.39■□□□□ 0.05
LINC00540-202ENST00000616974 PIK3AP1Q6ZUJ8 805 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 CCDC12Q8WUD4 166 aaPredicted RBP15.39■□□□□ 0.05
LINC00540-202ENST00000616974 MXRA8Q9BRK3 442 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 SCN5AQ14524 2016 aa15.39■□□□□ 0.05
LINC00540-202ENST00000616974 DDX39AO00148 427 aaKnown RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 MMP1P03956 469 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 MYL3P08590 195 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 PURAQ00577 322 aaKnown RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 CEP55Q53EZ4 464 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 SLC39A5Q6ZMH5 540 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 SH3RF1Q7Z6J0 888 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 DAGLBQ8NCG7 672 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 DPF3Q92784 378 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 KAT2BQ92831 832 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 MPHOSPH6Q99547 160 aaKnown RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 AP5M1Q9H0R1 490 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 EVPLQ92817 2033 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 MEIS1O00470 390 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 SLC37A4O43826 429 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 GJB2P29033 226 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 ICAM3P32942 547 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 PRR16Q569H4 304 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 DHX37Q8IY37 1157 aaKnown RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 DIS3L2Q8IYB7 885 aaKnown RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 C7orf61Q8IZ16 206 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 SPATA33Q96N06 139 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 JADE2Q9NQC1 790 aa15.38■□□□□ 0.05
LINC00540-202ENST00000616974 ZMYND8Q9ULU4 1186 aaPredicted RBP15.38■□□□□ 0.05
LINC00540-202ENST00000616974 REV3LO60673 3130 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 FIBPO43427 364 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 FOSP01100 380 aaPredicted RBP15.37■□□□□ 0.05
LINC00540-202ENST00000616974 GH1P01241 217 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 ITGB8P26012 769 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 NKX3-2P78367 333 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 HIC1Q14526 733 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 ATP11BQ9Y2G3 1177 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 LTBP2Q14767 1821 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 B4DLN1 442 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 PQBP1O60828 265 aaKnown RBP15.37■□□□□ 0.05
LINC00540-202ENST00000616974 NBR1Q14596 966 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 LLPHQ9BRT6 129 aaKnown RBP15.37■□□□□ 0.05
LINC00540-202ENST00000616974 STARD7Q9NQZ5 370 aa15.37■□□□□ 0.05
LINC00540-202ENST00000616974 DHX15O43143 795 aaKnown RBP15.36■□□□□ 0.05
LINC00540-202ENST00000616974 CCNE2O96020 404 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 RTP1P59025 263 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 PLA2G4DQ86XP0 818 aa15.36■□□□□ 0.05
LINC00540-202ENST00000616974 SPRYD3Q8NCJ5 442 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms