RNA–Protein interactions for RNA: ENST00000598580.1

GRAMD1A-209, Transcript of GRAM domain containing 1A, human

TSL 3

Gene GRAMD1A, Length 400 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRAMD1A-209	ENST00000598580	MKRN4P	Q13434	485 aa	Predicted RBP	12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	MFSD10	Q14728	455 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	GRM4	Q14833	912 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	KIAA0753	Q2KHM9	967 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	IFIT1B	Q5T764	474 aa	Known RBP	12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	ZNF618	Q5T7W0	954 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	LRRC8D	Q7L1W4	858 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	PPTC7	Q8NI37	304 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	SLC9A7	Q96T83	725 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	UBAC1	Q9BSL1	405 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	C16orf70	Q9BSU1	422 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	RIOX1	Q9H6W3	641 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	NOD1	Q9Y239	953 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	PCDHA1	Q9Y5I3	950 aa		12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	BAZ2B	Q9UIF8	2168 aa	Known RBP	12.84	□□□□□ -0.35
GRAMD1A-209	ENST00000598580	HIP1	O00291	1037 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CHML	P26374	656 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	ANTXR2	P58335	489 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TROAP	Q12815	778 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SEMA3F	Q13275	785 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LAMC2	Q13753	1193 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PGM5	Q15124	567 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	DGKD	Q16760	1214 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CELF3	Q5SZQ8	465 aa	Known RBP	12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TTC22	Q5TAA0	569 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	DHX37	Q8IY37	1157 aa	Known RBP	12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CAGE1	Q8TC20	777 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	AFAP1L1	Q8TED9	768 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	UHRF1	Q96T88	793 aa	Predicted RBP	12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MRVI1	Q9Y6F6	885 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LAMA4	Q16363	1823 aa		12.83	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PTPRS	Q13332	1948 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	BAIAP3	O94812	1187 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	GGPS1	O95749	300 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	UBA1	P22314	1058 aa	Known RBP	12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MRPS9	P82933	396 aa	Known RBP	12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	HOMER1	Q86YM7	354 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	C7orf31	Q8N865	590 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CNNM2	Q9H8M5	875 aa		12.82	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TLL1	O43897	1013 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PPFIA4	O75335	1185 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	COL9A1	P20849	921 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	HOXC8	P31273	242 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PTK7	Q13308	1070 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CNKSR3	Q6P9H4	555 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	FCHSD1	Q86WN1	690 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	IGDCC4	Q8TDY8	1250 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SPATA33	Q96N06	139 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SUGCT	Q9HAC7	445 aa		12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TCF20	Q9UGU0	1960 aa	Known RBP	12.81	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	KIAA1217	Q5T5P2	1943 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580		E7EWF7	191 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	IFIT3	O14879	490 aa	Known RBP	12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	GJB5	O95377	273 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	FAM117B	Q6P1L5	589 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SERINC5	Q86VE9	423 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	GDPD5	Q8WTR4	605 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PIBF1	Q8WXW3	757 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TANC1	Q9C0D5	1861 aa		12.8	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	PNMA6F	A0A0J9YX94	578 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	ABHD14A-ACY1	A0A1B0GW23	586 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LINC01553	A4QN01	128 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SPATA31C2	B4DYI2	1134 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TREH	O43280	583 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	POLR2M	P0CAP2	368 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	KCNJ6	P48051	423 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	ERVK-21	P61565	698 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SKIV2L	Q15477	1246 aa	Known RBP	12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CCDC155	Q8N6L0	562 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	DBF4B	Q8NFT6	615 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	RAD9A	Q99638	391 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MYL10	Q9BUA6	226 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	RNPEP	Q9H4A4	650 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	CD320	Q9NPF0	282 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MAP3K20	Q9NYL2	800 aa	Known RBP	12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	RTEL1	Q9NZ71	1219 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MTUS1	Q9ULD2	1270 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SUPT16H	Q9Y5B9	1047 aa	Known RBP	12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	FRMPD4	Q14CM0	1322 aa		12.79	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	KIF28P	B7ZC32	967 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SGSM2	O43147	1006 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LGR5	O75473	907 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LGALS2	P05162	132 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SMIM10L2A	P0DMW4	78 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	SMIM10L2B	P0DMW5	78 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TGFB3	P10600	412 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	USP17L6P	Q6QN14	398 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	TRIM50	Q86XT4	487 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	MAP4K1	Q92918	833 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	INPP4A	Q96PE3	977 aa	Predicted RBP	12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	C17orf80	Q9BSJ5	609 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	EPHX3	Q9H6B9	360 aa		12.78	□□□□□ -0.36
GRAMD1A-209	ENST00000598580	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	12.77	□□□□□ -0.37
GRAMD1A-209	ENST00000598580	RSPH10B2	B2RC85	870 aa		12.77	□□□□□ -0.37
GRAMD1A-209	ENST00000598580		H3BRB1	525 aa		12.77	□□□□□ -0.37
GRAMD1A-209	ENST00000598580	MEIS2	O14770	477 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms