RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PIBF1	Q8WXW3	757 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	ARNTL2	Q8WYA1	636 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	WNT8B	Q93098	351 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	SPATA33	Q96N06	139 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	KATNAL1	Q9BW62	490 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	RIOX1	Q9H6W3	641 aa		12.22	□□□□□ -0.45
LSM4-205	ENST00000597776		U3KPZ7	1027 aa	Predicted RBP	12.22	□□□□□ -0.45
LSM4-205	ENST00000597776	PTPRS	Q13332	1948 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	LCHN	A4D1U4	455 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776		E7EWF7	191 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	TNFRSF10A	O00220	468 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	NBN	O60934	754 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	BAIAP3	O94812	1187 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	POLR2M	P0CAP2	368 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	HOXD8	P13378	290 aa	Predicted RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	UBA1	P22314	1058 aa	Known RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	CCND2	P30279	289 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	KCNJ6	P48051	423 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	ANTXR2	P58335	489 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	WDR5	P61964	334 aa	Known RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	DEFB103A	P81534	67 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	MRPS5	P82675	430 aa	Known RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	TFF2	Q03403	129 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	RBL2	Q08999	1139 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	TROAP	Q12815	778 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	HIC1	Q14526	733 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	WTAP	Q15007	396 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	CELF3	Q5SZQ8	465 aa	Known RBP	12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	MYSM1	Q5VVJ2	828 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	ADAMTS19	Q8TE59	1207 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	BCAS3	Q9H6U6	928 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	MTCH2	Q9Y6C9	303 aa		12.21	□□□□□ -0.45
LSM4-205	ENST00000597776	TRIP12	Q14669	1992 aa	Predicted RBP	12.21	□□□□□ -0.46
LSM4-205	ENST00000597776	ERICH2	A1L162	156 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	KIF28P	B7ZC32	967 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	SGSM2	O43147	1006 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	TLL1	O43897	1013 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	PTK7	Q13308	1070 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	MBTPS1	Q14703	1052 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	SKIV2L	Q15477	1246 aa	Known RBP	12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	TRIM71	Q2Q1W2	868 aa	Known RBP	12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	ZNF618	Q5T7W0	954 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	CNKSR3	Q6P9H4	555 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	TRAF7	Q6Q0C0	670 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	NCOA7	Q8NI08	942 aa		12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	MAP3K20	Q9NYL2	800 aa	Known RBP	12.2	□□□□□ -0.46
LSM4-205	ENST00000597776	MYH7B	A7E2Y1	1941 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	BAZ2B	Q9UIF8	2168 aa	Known RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	PNMA6F	A0A0J9YX94	578 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	GTPBP6	O43824	516 aa	Predicted RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	PPFIA4	O75335	1185 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	CXCL10	P02778	98 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	SART3	Q15020	963 aa	Known RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	KCNV1	Q6PIU1	500 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	CATIP	Q7Z7H3	387 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	MB21D2	Q8IYB1	491 aa	Predicted RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	IL27	Q8NEV9	243 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	NECAB3	Q96P71	396 aa	Predicted RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	UHRF1	Q96T88	793 aa	Predicted RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	C16orf70	Q9BSU1	422 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	MYL10	Q9BUA6	226 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	MLXIP	Q9HAP2	919 aa		12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	COL4A4	P53420	1690 aa	Predicted RBP	12.19	□□□□□ -0.46
LSM4-205	ENST00000597776	PRRC2B	Q5JSZ5	2229 aa	Known RBP	12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	TGFB3	P10600	412 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	KCNQ1	P51787	676 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	MRPS9	P82933	396 aa	Known RBP	12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	TRAF1	Q13077	416 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	GRB10	Q13322	594 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	COL9A3	Q14050	684 aa	Predicted RBP	12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	FAM117B	Q6P1L5	589 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	SAMD3	Q8N6K7	520 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	IGDCC4	Q8TDY8	1250 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	ZBED2	Q9BTP6	218 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	LY9	Q9HBG7	655 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	TELO2	Q9Y4R8	837 aa		12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	RBM8A	Q9Y5S9	174 aa	Known RBP	12.18	□□□□□ -0.46
LSM4-205	ENST00000597776	FRMPD4	Q14CM0	1322 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	ABHD14A-ACY1	A0A1B0GW23	586 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	LPXN	O60711	386 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	PARN	O95453	639 aa	Known RBP	12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	LGALS2	P05162	132 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	POU3F3	P20264	500 aa	Predicted RBP	12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	THPO	P40225	353 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	SEMA3F	Q13275	785 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	SERINC5	Q86VE9	423 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	TRIM50	Q86XT4	487 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	ZNF654	Q8IZM8	581 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	GDPD5	Q8WTR4	605 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	MAP4K1	Q92918	833 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	INPP4A	Q96PE3	977 aa	Predicted RBP	12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	RTEL1	Q9NZ71	1219 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	MTUS1	Q9ULD2	1270 aa		12.17	□□□□□ -0.46
LSM4-205	ENST00000597776	C17orf102	A2RUQ5	167 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	SPATA31C2	B4DYI2	1134 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776		H3BRB1	525 aa		12.16	□□□□□ -0.46
LSM4-205	ENST00000597776	NOP56	O00567	594 aa	Known RBP	12.16	□□□□□ -0.46

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