RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CLK2P49760 499 aaKnown RBP12.67□□□□□ -0.38
LIG1-211ENST00000596457 GNPTABQ3T906 1256 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 BRDTQ58F21 947 aaPredicted RBP12.67□□□□□ -0.38
LIG1-211ENST00000596457 CCDC62Q6P9F0 684 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 DHX37Q8IY37 1157 aaKnown RBP12.67□□□□□ -0.38
LIG1-211ENST00000596457 REXO1Q8N1G1 1221 aaKnown RBP12.67□□□□□ -0.38
LIG1-211ENST00000596457 NSUN7Q8NE18 718 aaKnown RBP12.67□□□□□ -0.38
LIG1-211ENST00000596457 BICD2Q8TD16 824 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 GLT1D1Q96MS3 346 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 ALG1Q9BT22 464 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 STARD7Q9NQZ5 370 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 SH3GLB2Q9NR46 395 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 GJB4Q9NTQ9 266 aa12.67□□□□□ -0.38
LIG1-211ENST00000596457 STK36Q9NRP7 1315 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 MOXD2PA6NHM9 499 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 STAM2O75886 525 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 GGPS1O95749 300 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 CST5P28325 142 aaPredicted RBP12.66□□□□□ -0.38
LIG1-211ENST00000596457 BMP8BP34820 402 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 CPT1AP50416 773 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 RTP1P59025 263 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 SP2Q02086 613 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 ST3GAL1Q11201 340 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 AP3B2Q13367 1082 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 CCSAPQ6IQ19 270 aaPredicted RBP12.66□□□□□ -0.38
LIG1-211ENST00000596457 XRRA1Q6P2D8 792 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 KCNV1Q6PIU1 500 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 CXCL17Q6UXB2 119 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 AFG1LQ8WV93 481 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 WASF1Q92558 559 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 UIMC1Q96RL1 719 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 BCAS3Q9H6U6 928 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 MLXIPQ9HAP2 919 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 PRDM6Q9NQX0 595 aa12.66□□□□□ -0.38
LIG1-211ENST00000596457 SH2B1Q9NRF2 756 aaPredicted RBP12.66□□□□□ -0.38
LIG1-211ENST00000596457 FIBPO43427 364 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 CD2BP2O95400 341 aaKnown RBP12.65□□□□□ -0.38
LIG1-211ENST00000596457 FDPSP14324 419 aaKnown RBP12.65□□□□□ -0.38
LIG1-211ENST00000596457 SYN1P17600 705 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 PSMC6P62333 389 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 SP4Q02446 784 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 ARHGAP1Q07960 439 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 LAMC2Q13753 1193 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 TRIM60Q495X7 471 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 CYFIP1Q7L576 1253 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 BLIDQ8IZY5 108 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 PPP1R13LQ8WUF5 828 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 INPP4AQ96PE3 977 aaPredicted RBP12.65□□□□□ -0.38
LIG1-211ENST00000596457 PRO3102Q9H379 93 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 POLR3EQ9NVU0 708 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 ZMYND8Q9ULU4 1186 aaPredicted RBP12.65□□□□□ -0.38
LIG1-211ENST00000596457 PCDHA4Q9UN74 947 aa12.65□□□□□ -0.38
LIG1-211ENST00000596457 SPATA31C2B4DYI2 1134 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 TGFB3P10600 412 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 ITGB5P18084 799 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 UBA1P22314 1058 aaKnown RBP12.64□□□□□ -0.39
LIG1-211ENST00000596457 ARHGAP4P98171 946 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 SEMA3FQ13275 785 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 MTMR1Q13613 665 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 TRIM29Q14134 588 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 CELF3Q5SZQ8 465 aaKnown RBP12.64□□□□□ -0.39
LIG1-211ENST00000596457 MCTP2Q6DN12 878 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 CYP2W1Q8TAV3 490 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 LRCH3Q96II8 777 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 SPATA33Q96N06 139 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 MXRA8Q9BRK3 442 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 PRDM5Q9NQX1 630 aaPredicted RBP12.64□□□□□ -0.39
LIG1-211ENST00000596457 UBIAD1Q9Y5Z9 338 aa12.64□□□□□ -0.39
LIG1-211ENST00000596457 A0A0U1RQG5 324 aaPredicted RBP12.63□□□□□ -0.39
LIG1-211ENST00000596457 NOP56O00567 594 aaKnown RBP12.63□□□□□ -0.39
LIG1-211ENST00000596457 SOX1O00570 391 aaPredicted RBP12.63□□□□□ -0.39
LIG1-211ENST00000596457 PQBP1O60828 265 aaKnown RBP12.63□□□□□ -0.39
LIG1-211ENST00000596457 ATP9AO75110 1047 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 MMP3P08254 477 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 ARP10275 920 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 ICAM3P32942 547 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 SREBF1P36956 1147 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 NKX3-2P78367 333 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 GUCY1B3Q02153 619 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 NEDD9Q14511 834 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 FAM47CQ5HY64 1035 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 MYSM1Q5VVJ2 828 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 PLA2G4DQ86XP0 818 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 FAM184AQ8NB25 1140 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 GPRASP2Q96D09 838 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 GDF15Q99988 308 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 MTG1Q9BT17 334 aaPredicted RBP12.63□□□□□ -0.39
LIG1-211ENST00000596457 PHF20Q9BVI0 1012 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 JADE2Q9NQC1 790 aa12.63□□□□□ -0.39
LIG1-211ENST00000596457 CCDC194A0A1B0GVG4 234 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 A6NJR5 290 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 DDX39AO00148 427 aaKnown RBP12.62□□□□□ -0.39
LIG1-211ENST00000596457 CABYRO75952 493 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 COL9A1P20849 921 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 PURAQ00577 322 aaKnown RBP12.62□□□□□ -0.39
LIG1-211ENST00000596457 TLE2Q04725 743 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 ITGA7Q13683 1181 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 DGKDQ16760 1214 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 HSDL1Q3SXM5 330 aa12.62□□□□□ -0.39
LIG1-211ENST00000596457 CEP55Q53EZ4 464 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms