RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TDP2O95551 362 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 AKR1A1P14550 325 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 KCNA2P16389 499 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 XBP1P17861 261 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 GJA8P48165 433 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 TNFAIP2Q03169 654 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 ITGB3BPQ13352 177 aaPredicted RBP12.06□□□□□ -0.48
LIG1-210ENST00000596332 CEP55Q53EZ4 464 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 TNS4Q8IZW8 715 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 C4orf32Q8N8J7 132 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 U2AF1L4Q8WU68 220 aaKnown RBP12.06□□□□□ -0.48
LIG1-210ENST00000596332 GPRASP2Q96D09 838 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 KCNH7Q9NS40 1196 aa12.06□□□□□ -0.48
LIG1-210ENST00000596332 MYH7BA7E2Y1 1941 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 SLC37A4O43826 429 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 DUSP11O75319 330 aaKnown RBP12.05□□□□□ -0.48
LIG1-210ENST00000596332 PGK1P00558 417 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 TXNP10599 105 aaKnown RBP12.05□□□□□ -0.48
LIG1-210ENST00000596332 TGFB3P10600 412 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 EN2P19622 333 aaPredicted RBP12.05□□□□□ -0.48
LIG1-210ENST00000596332 UBA1P22314 1058 aaKnown RBP12.05□□□□□ -0.48
LIG1-210ENST00000596332 GJA9P57773 515 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 RESTQ13127 1097 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 NONOQ15233 471 aaKnown RBP eCLIP12.05□□□□□ -0.48
LIG1-210ENST00000596332 Q4G0T1 1027 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 MYSM1Q5VVJ2 828 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 B3GNT9Q6UX72 402 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 NIPA1Q7RTP0 329 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 NOSTRINQ8IVI9 506 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 SCFD2Q8WU76 684 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 HAS1Q92839 578 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 GJA10Q969M2 543 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 Q9Y3F1 56 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 RBM19Q9Y4C8 960 aaKnown RBP12.05□□□□□ -0.48
LIG1-210ENST00000596332 KIAA1217Q5T5P2 1943 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 SYNRGQ9UMZ2 1314 aa12.05□□□□□ -0.48
LIG1-210ENST00000596332 MSH4O15457 936 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 MAFGO15525 162 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 FIBPO43427 364 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 COL6A1P12109 1028 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 HOXD8P13378 290 aaPredicted RBP12.04□□□□□ -0.48
LIG1-210ENST00000596332 CNGA1P29973 690 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 NBR1Q14596 966 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 LRRC41Q15345 812 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 CELF3Q5SZQ8 465 aaKnown RBP12.04□□□□□ -0.48
LIG1-210ENST00000596332 PPP4R3AQ6IN85 833 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 MOXD1Q6UVY6 613 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 ETNPPLQ8TBG4 499 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 EMID1Q96A84 441 aaPredicted RBP12.04□□□□□ -0.48
LIG1-210ENST00000596332 UIMC1Q96RL1 719 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 SENP7Q9BQF6 1050 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 AGO4Q9HCK5 861 aaKnown RBP12.04□□□□□ -0.48
LIG1-210ENST00000596332 KCNMB3Q9NPA1 279 aa12.04□□□□□ -0.48
LIG1-210ENST00000596332 CCDC194A0A1B0GVG4 234 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 A6NJR5 290 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 B4DLN1 442 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 DYNC1LI2O43237 492 aaPredicted RBP12.03□□□□□ -0.48
LIG1-210ENST00000596332 FARP2O94887 1054 aaPredicted RBP12.03□□□□□ -0.48
LIG1-210ENST00000596332 CST5P28325 142 aaPredicted RBP12.03□□□□□ -0.48
LIG1-210ENST00000596332 TRIM29Q14134 588 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 TTLL4Q14679 1199 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 HSDL1Q3SXM5 330 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 FAM173BQ6P4H8 233 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 NEK8Q86SG6 692 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 PLA2G4DQ86XP0 818 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 SLC5A5Q92911 643 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 MTMR9Q96QG7 549 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 TMEM60Q9H2L4 133 aa12.03□□□□□ -0.48
LIG1-210ENST00000596332 FRMPD3Q5JV73 1810 aa12.02□□□□□ -0.48
LIG1-210ENST00000596332 GSTTP1A0A1W2PQM5 241 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 NKRFO15226 690 aaKnown RBP eCLIP12.02□□□□□ -0.49
LIG1-210ENST00000596332 STX6O43752 255 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 MSCO60682 206 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 PSMD10O75832 226 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 ATG7O95352 703 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 GGPS1O95749 300 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 CCNE2O96020 404 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 BEX3Q00994 111 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 MTMR1Q13613 665 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 LETM2Q2VYF4 491 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 PRR16Q569H4 304 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 KCNV1Q6PIU1 500 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 CYFIP1Q7L576 1253 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 TLK2Q86UE8 772 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 FERMT3Q86UX7 667 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 DIS3LQ8TF46 1054 aaKnown RBP12.02□□□□□ -0.49
LIG1-210ENST00000596332 PCYT2Q99447 389 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 MPHOSPH6Q99547 160 aaKnown RBP12.02□□□□□ -0.49
LIG1-210ENST00000596332 XPNPEP3Q9NQH7 507 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 KIF3AQ9Y496 699 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 PCDHB6Q9Y5E3 794 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 MRVI1Q9Y6F6 885 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 GRIN2DO15399 1336 aa12.02□□□□□ -0.49
LIG1-210ENST00000596332 MKI67P46013 3256 aaKnown RBP12.01□□□□□ -0.49
LIG1-210ENST00000596332 SORBS3O60504 671 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 BRD1O95696 1058 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 ATXN8OSP0DMR3 200 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 RARBP10826 455 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 SPIRE1Q08AE8 756 aa12.01□□□□□ -0.49
LIG1-210ENST00000596332 SAFBQ15424 915 aaKnown RBP eCLIP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms