RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TSPYL2Q9H2G4 693 aaPredicted RBP27.74■■■□□ 2.03
LSM4-202ENST00000593564 SENP2Q9HC62 589 aa27.74■■■□□ 2.03
LSM4-202ENST00000593564 CYTH3O43739 400 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 PPFIA4O75335 1185 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 TGFB3P10600 412 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 KCNJ6P48051 423 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 WTAPQ15007 396 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 SART3Q15020 963 aaKnown RBP27.73■■■□□ 2.03
LSM4-202ENST00000593564 MICALL1Q8N3F8 863 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 NCOA7Q8NI08 942 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 SPATA33Q96N06 139 aa27.73■■■□□ 2.03
LSM4-202ENST00000593564 PNMA6FA0A0J9YX94 578 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 E7EWF7 191 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 NBNO60934 754 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 ARHGEF15O94989 841 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 GGPS1O95749 300 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 CCND2P30279 289 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 WDR5P61964 334 aaKnown RBP27.72■■■□□ 2.03
LSM4-202ENST00000593564 HSDL1Q3SXM5 330 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 CNKSR3Q6P9H4 555 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 CERS4Q9HA82 394 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 SUPT16HQ9Y5B9 1047 aaKnown RBP27.72■■■□□ 2.03
LSM4-202ENST00000593564 MTCH2Q9Y6C9 303 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 TAF6LQ9Y6J9 622 aa27.72■■■□□ 2.03
LSM4-202ENST00000593564 EPOPA6NHQ4 379 aa27.71■■■□□ 2.03
LSM4-202ENST00000593564 RFXAPO00287 272 aa27.71■■■□□ 2.03
LSM4-202ENST00000593564 GTPBP6O43824 516 aaPredicted RBP27.71■■■□□ 2.03
LSM4-202ENST00000593564 UBA1P22314 1058 aaKnown RBP27.71■■■□□ 2.03
LSM4-202ENST00000593564 TRIM71Q2Q1W2 868 aaKnown RBP27.71■■■□□ 2.03
LSM4-202ENST00000593564 NCOR1O75376 2440 aa27.71■■■□□ 2.03
LSM4-202ENST00000593564 REV3LO60673 3130 aa27.71■■■□□ 2.03
LSM4-202ENST00000593564 PRRC2BQ5JSZ5 2229 aaKnown RBP27.7■■■□□ 2.02
LSM4-202ENST00000593564 SGSM2O43147 1006 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 TLL1O43897 1013 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 SP2Q02086 613 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 FCHSD1Q86WN1 690 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 ADAMTS19Q8TE59 1207 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 ARNTL2Q8WYA1 636 aa27.7■■■□□ 2.02
LSM4-202ENST00000593564 BAZ2BQ9UIF8 2168 aaKnown RBP27.69■■■□□ 2.02
LSM4-202ENST00000593564 SORBS3O60504 671 aa27.69■■■□□ 2.02
LSM4-202ENST00000593564 TRAF7Q6Q0C0 670 aa27.69■■■□□ 2.02
LSM4-202ENST00000593564 CATIPQ7Z7H3 387 aa27.69■■■□□ 2.02
LSM4-202ENST00000593564 IL27Q8NEV9 243 aa27.69■■■□□ 2.02
LSM4-202ENST00000593564 XIRP2A4UGR9 3374 aa27.69■■■□□ 2.02
LSM4-202ENST00000593564 FRMPD4Q14CM0 1322 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 ABHD14A-ACY1A0A1B0GW23 586 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 ZNF200P98182 395 aaPredicted RBP27.68■■■□□ 2.02
LSM4-202ENST00000593564 GPKOWQ92917 476 aaPredicted RBP eCLIP27.68■■■□□ 2.02
LSM4-202ENST00000593564 WNT8BQ93098 351 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 C16orf70Q9BSU1 422 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 MLXIPQ9HAP2 919 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 MYH7BA7E2Y1 1941 aa27.68■■■□□ 2.02
LSM4-202ENST00000593564 EFCAB14O75071 495 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 ANTXR2P58335 489 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 DEFB103AP81534 67 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 HIC1Q14526 733 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 TCTN1Q2MV58 587 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 ZNF618Q5T7W0 954 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 MB21D2Q8IYB1 491 aaPredicted RBP27.67■■■□□ 2.02
LSM4-202ENST00000593564 IGDCC4Q8TDY8 1250 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 MAP4K1Q92918 833 aa27.67■■■□□ 2.02
LSM4-202ENST00000593564 ZFP91Q96JP5 570 aaPredicted RBP27.67■■■□□ 2.02
LSM4-202ENST00000593564 UHRF1Q96T88 793 aaPredicted RBP27.67■■■□□ 2.02
LSM4-202ENST00000593564 STAM2O75886 525 aa27.66■■■□□ 2.02
LSM4-202ENST00000593564 MBTPS1Q14703 1052 aa27.66■■■□□ 2.02
LSM4-202ENST00000593564 GNPTABQ3T906 1256 aa27.66■■■□□ 2.02
LSM4-202ENST00000593564 SERINC5Q86VE9 423 aa27.66■■■□□ 2.02
LSM4-202ENST00000593564 MAP3K14Q99558 947 aa27.66■■■□□ 2.02
LSM4-202ENST00000593564 PTPRSQ13332 1948 aa27.65■■■□□ 2.02
LSM4-202ENST00000593564 ICAM3P32942 547 aa27.65■■■□□ 2.02
LSM4-202ENST00000593564 MRPS9P82933 396 aaKnown RBP27.65■■■□□ 2.02
LSM4-202ENST00000593564 SKIV2LQ15477 1246 aaKnown RBP27.65■■■□□ 2.02
LSM4-202ENST00000593564 AAK1Q2M2I8 961 aa27.65■■■□□ 2.02
LSM4-202ENST00000593564 TMCO2Q7Z6W1 182 aaPredicted RBP27.65■■■□□ 2.02
LSM4-202ENST00000593564 INPP4AQ96PE3 977 aaPredicted RBP27.65■■■□□ 2.02
LSM4-202ENST00000593564 ZBED2Q9BTP6 218 aa27.65■■■□□ 2.02
LSM4-202ENST00000593564 LCHNA4D1U4 455 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 GJB5O95377 273 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 HOXC8P31273 242 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 GRB10Q13322 594 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 IKBKEQ14164 716 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 SPZ1Q9BXG8 430 aa27.64■■■□□ 2.02
LSM4-202ENST00000593564 RBM8AQ9Y5S9 174 aaKnown RBP27.64■■■□□ 2.02
LSM4-202ENST00000593564 BDP1A6H8Y1 2624 aa27.64■■■□□ 2.01
LSM4-202ENST00000593564 EMSYQ7Z589 1322 aa27.64■■■□□ 2.01
LSM4-202ENST00000593564 H3BRB1 525 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 LGR5O75473 907 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 DDAH1O94760 285 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 LGALS2P05162 132 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 TFF2Q03403 129 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 NEDD9Q14511 834 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 KRT40Q6A162 431 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 METTL7BQ6UX53 244 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 SPRED2Q7Z698 418 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 PIBF1Q8WXW3 757 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 RAD9AQ99638 391 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 MTA3Q9BTC8 594 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 TUT1Q9H6E5 874 aaKnown RBP27.63■■■□□ 2.01
LSM4-202ENST00000593564 LY9Q9HBG7 655 aa27.63■■■□□ 2.01
LSM4-202ENST00000593564 C17orf102A2RUQ5 167 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms