RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SLC7A14Q8TBB6 771 aa7.11□□□□□ -1.27
SMAD4-216ENST00000593223 TSPAN17Q96FV3 270 aa7.11□□□□□ -1.27
SMAD4-216ENST00000593223 BCAS3Q9H6U6 928 aa7.11□□□□□ -1.27
SMAD4-216ENST00000593223 CNTD2Q9H8S5 307 aa7.11□□□□□ -1.27
SMAD4-216ENST00000593223 MBD1Q9UIS9 605 aaPredicted RBP7.11□□□□□ -1.27
SMAD4-216ENST00000593223 PALD1Q9ULE6 856 aa7.11□□□□□ -1.27
SMAD4-216ENST00000593223 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-216ENST00000593223 TLDC2A0PJX2 215 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 TCAF2A6NFQ2 919 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 HGSO14964 777 aaPredicted RBP7.1□□□□□ -1.27
SMAD4-216ENST00000593223 SGSM2O43147 1006 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 MAFKO60675 156 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 COL6A2P12110 1019 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 NCKAP1LP55160 1127 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 ST5P78524 1137 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 TRIM61Q5EBN2 209 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 LDHDQ86WU2 507 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 SYNPOQ8N3V7 929 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 PIP4K2CQ8TBX8 421 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.1□□□□□ -1.27
SMAD4-216ENST00000593223 YIPF4Q9BSR8 244 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 CDIP1Q9H305 208 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 CATSPERZQ9NTU4 200 aa7.1□□□□□ -1.27
SMAD4-216ENST00000593223 BAZ1AQ9NRL2 1556 aaPredicted RBP7.09□□□□□ -1.27
SMAD4-216ENST00000593223 RASGRP1O95267 797 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 PFKLP17858 780 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 CDR1P51861 262 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 TARBP2Q15633 366 aaKnown RBP7.09□□□□□ -1.27
SMAD4-216ENST00000593223 FNDC3BQ53EP0 1204 aaKnown RBP7.09□□□□□ -1.27
SMAD4-216ENST00000593223 ATG14Q6ZNE5 492 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 C16orf86Q6ZW13 317 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 GSTCDQ8NEC7 633 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 MZB1Q8WU39 189 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 FBXW5Q969U6 566 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 FAN1Q9Y2M0 1017 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 TBX22Q9Y458 520 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 PCDHB4Q9Y5E5 795 aa7.09□□□□□ -1.27
SMAD4-216ENST00000593223 GSTA4O15217 222 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 NCAM1P13591 858 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 GLDCP23378 1020 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 RAP1GAPP47736 663 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 DNM2P50570 870 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 EPHB3P54753 998 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 C21orf62-AS1Q17RA5 79 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 FAM47CQ5HY64 1035 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 OTOP3Q7RTS5 596 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 PCDH19Q8TAB3 1148 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 SLC6A20Q9NP91 592 aa7.08□□□□□ -1.28
SMAD4-216ENST00000593223 LMTK3Q96Q04 1460 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 ARVCFO00192 962 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 N4BP3O15049 544 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 BUB1BO60566 1050 aaPredicted RBP7.07□□□□□ -1.28
SMAD4-216ENST00000593223 C1QTNF9P0C862 333 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 PMLP29590 882 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 ZNF124Q15973 351 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 EP400NLQ6ZTU2 488 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 FGD2Q7Z6J4 655 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 DDX11Q96FC9 970 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 SCLYQ96I15 445 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 CLUHP3Q96NS8 147 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 SMOC1Q9H4F8 434 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 GCM1Q9NP62 436 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 MYOTQ9UBF9 498 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 PLA2G2DQ9UNK4 145 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 ZNF652Q9Y2D9 606 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 NUB1Q9Y5A7 615 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 CD2APQ9Y5K6 639 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 IRAK3Q9Y616 596 aa7.07□□□□□ -1.28
SMAD4-216ENST00000593223 SLC27A2O14975 620 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 KCNQ2O43526 872 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 OPA1O60313 960 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 ASGR2P07307 311 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 PYGMP11217 842 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 PABPC4Q13310 644 aaKnown RBP eCLIP7.06□□□□□ -1.28
SMAD4-216ENST00000593223 CRY1Q16526 586 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 TKFCQ3LXA3 575 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 EMC4Q5J8M3 183 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 ETV3LQ6ZN32 361 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 AMIGO3Q86WK7 504 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 BHLHE22Q8NFJ8 381 aaPredicted RBP7.06□□□□□ -1.28
SMAD4-216ENST00000593223 PHOSPHO1Q8TCT1 267 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 PANK1Q8TE04 598 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 RNF38Q9H0F5 515 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 TRIM39Q9HCM9 518 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 DSEQ9UL01 958 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 PCDHA5Q9Y5H7 936 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 ARHGEF11O15085 1522 aa7.06□□□□□ -1.28
SMAD4-216ENST00000593223 TCRBV16S1A1N1A0A5B0 115 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 CCDC66A2RUB6 948 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 NKRFO15226 690 aaKnown RBP eCLIP7.05□□□□□ -1.28
SMAD4-216ENST00000593223 TADA3O75528 432 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 TSPAN15O95858 294 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 C8AP07357 584 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 MED14OSP0DP75 135 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 YBX3P16989 372 aaKnown RBP eCLIP7.05□□□□□ -1.286e-8■■□□□ 12.3
SMAD4-216ENST00000593223 KRT15P19012 456 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 SDE2Q6IQ49 451 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 C16orf59Q7L2K0 433 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 ANKLE2Q86XL3 938 aa7.05□□□□□ -1.28
SMAD4-216ENST00000593223 TRIM48Q8IWZ4 208 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms