RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 AEBP2Q6ZN18 517 aaPredicted RBP25.42■■□□□ 1.66
SMAD4-216ENST00000593223 CHIC1Q5VXU3 224 aa24.75■■□□□ 1.55
SMAD4-216ENST00000593223 PHF23Q9BUL5 403 aaPredicted RBP21.75■■□□□ 1.07
SMAD4-216ENST00000593223 SENP3Q9H4L4 574 aaPredicted RBP21.62■■□□□ 1.05
SMAD4-216ENST00000593223 FOXD1Q16676 465 aa20.3■□□□□ 0.84
SMAD4-216ENST00000593223 PLPPR3Q6T4P5 718 aa20.19■□□□□ 0.82
SMAD4-216ENST00000593223 POTEDQ86YR6 584 aa19.5■□□□□ 0.71
SMAD4-216ENST00000593223 ADRA2BP18089 450 aa19.2■□□□□ 0.66
SMAD4-216ENST00000593223 PPP6R1Q9UPN7 881 aa19.17■□□□□ 0.66
SMAD4-216ENST00000593223 MSH5O43196 834 aa19.07■□□□□ 0.64
SMAD4-216ENST00000593223 PIAS4Q8N2W9 510 aaPredicted RBP18.8■□□□□ 0.6
SMAD4-216ENST00000593223 PPP4R3CPQ6ZMV5 832 aa17.8■□□□□ 0.44
SMAD4-216ENST00000593223 SCAF1Q9H7N4 1312 aaKnown RBP17.62■□□□□ 0.41
SMAD4-216ENST00000593223 KCNA4P22459 653 aa17.49■□□□□ 0.39
SMAD4-216ENST00000593223 NCBP3Q53F19 620 aaKnown RBP17.41■□□□□ 0.38
SMAD4-216ENST00000593223 MAPK8IP2Q13387 824 aaPredicted RBP17.38■□□□□ 0.37
SMAD4-216ENST00000593223 CNKSR2Q8WXI2 1034 aa17.27■□□□□ 0.36
SMAD4-216ENST00000593223 DMRT2Q9Y5R5 561 aa17.11■□□□□ 0.33
SMAD4-216ENST00000593223 NPM3O75607 178 aaKnown RBP17.09■□□□□ 0.33
SMAD4-216ENST00000593223 RNF216Q9NWF9 866 aaPredicted RBP16.89■□□□□ 0.29
SMAD4-216ENST00000593223 HOXD11P31277 338 aaPredicted RBP16.77■□□□□ 0.28
SMAD4-216ENST00000593223 SLC4A1APQ9BWU0 796 aaKnown RBP16.72■□□□□ 0.27
SMAD4-216ENST00000593223 CACNB1Q02641 598 aaPredicted RBP16.68■□□□□ 0.26
SMAD4-216ENST00000593223 DCAF8L1A6NGE4 600 aa16.49■□□□□ 0.23
SMAD4-216ENST00000593223 DNAJC5BQ9UF47 199 aa16.48■□□□□ 0.23
SMAD4-216ENST00000593223 EHMT2Q96KQ7 1210 aa16.4■□□□□ 0.22
SMAD4-216ENST00000593223 RNF39Q9H2S5 420 aa16.3■□□□□ 0.2
SMAD4-216ENST00000593223 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.09■□□□□ 0.17
SMAD4-216ENST00000593223 SLC4A2P04920 1241 aa16.08■□□□□ 0.16
SMAD4-216ENST00000593223 FOXD4L1Q9NU39 408 aa16.08■□□□□ 0.16
SMAD4-216ENST00000593223 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
SMAD4-216ENST00000593223 ZBTB22O15209 634 aa16.06■□□□□ 0.16
SMAD4-216ENST00000593223 C1QBPQ07021 282 aaKnown RBP15.97■□□□□ 0.15
SMAD4-216ENST00000593223 MYCNP04198 464 aaPredicted RBP15.81■□□□□ 0.12
SMAD4-216ENST00000593223 U3KPZ7 1027 aaPredicted RBP15.76■□□□□ 0.11
SMAD4-216ENST00000593223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
SMAD4-216ENST00000593223 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
SMAD4-216ENST00000593223 SAMD1Q6SPF0 538 aaPredicted RBP15.59■□□□□ 0.09
SMAD4-216ENST00000593223 APLP2Q06481 763 aa15.5■□□□□ 0.07
SMAD4-216ENST00000593223 ATXN8OSP0DMR3 200 aa15.49■□□□□ 0.07
SMAD4-216ENST00000593223 ATF5Q9Y2D1 282 aaPredicted RBP15.35■□□□□ 0.05
SMAD4-216ENST00000593223 CAPN15O75808 1086 aa15.31■□□□□ 0.04
SMAD4-216ENST00000593223 SPINK5Q9NQ38 1064 aaPredicted RBP15.31■□□□□ 0.04
SMAD4-216ENST00000593223 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
SMAD4-216ENST00000593223 ZNF219Q9P2Y4 722 aaPredicted RBP15.22■□□□□ 0.03
SMAD4-216ENST00000593223 POTEHQ6S545 545 aa15.16■□□□□ 0.02
SMAD4-216ENST00000593223 DSG3P32926 999 aa15.1■□□□□ 0.01
SMAD4-216ENST00000593223 ABCB7O75027 752 aa15.01□□□□□ -0.01
SMAD4-216ENST00000593223 POLA2Q14181 598 aa15□□□□□ -0.01
SMAD4-216ENST00000593223 FBLN2P98095 1184 aa14.79□□□□□ -0.04
SMAD4-216ENST00000593223 ZBTB12Q9Y330 459 aaPredicted RBP14.77□□□□□ -0.05
SMAD4-216ENST00000593223 MKRN4PQ13434 485 aaPredicted RBP14.67□□□□□ -0.06
SMAD4-216ENST00000593223 FKBP8Q14318 412 aa14.59□□□□□ -0.07
SMAD4-216ENST00000593223 OSCARQ8IYS5 282 aa14.48□□□□□ -0.09
SMAD4-216ENST00000593223 SPDYE4A6NLX3 237 aa14.47□□□□□ -0.09
SMAD4-216ENST00000593223 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
SMAD4-216ENST00000593223 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
SMAD4-216ENST00000593223 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
SMAD4-216ENST00000593223 ZNF692Q9BU19 519 aaPredicted RBP14.36□□□□□ -0.11
SMAD4-216ENST00000593223 RBM42Q9BTD8 480 aaKnown RBP14.32□□□□□ -0.12
SMAD4-216ENST00000593223 CHRDL2Q6WN34 429 aa14.28□□□□□ -0.12
SMAD4-216ENST00000593223 SSUH2Q9Y2M2 353 aa14.21□□□□□ -0.13
SMAD4-216ENST00000593223 PABPN1Q86U42 306 aaKnown RBP eCLIP14.15□□□□□ -0.14
SMAD4-216ENST00000593223 PROM2Q8N271 834 aa14.14□□□□□ -0.15
SMAD4-216ENST00000593223 AKT1S1Q96B36 256 aa14.11□□□□□ -0.15
SMAD4-216ENST00000593223 FBXO3Q9UK99 471 aa14.06□□□□□ -0.16
SMAD4-216ENST00000593223 SP7Q8TDD2 431 aaPredicted RBP13.98□□□□□ -0.17
SMAD4-216ENST00000593223 REM2Q8IYK8 340 aaPredicted RBP13.97□□□□□ -0.17
SMAD4-216ENST00000593223 STAG3Q9UJ98 1225 aa13.95□□□□□ -0.18
SMAD4-216ENST00000593223 SPDYE1Q8NFV5 336 aaPredicted RBP13.93□□□□□ -0.18
SMAD4-216ENST00000593223 CLEC11AQ9Y240 323 aa13.91□□□□□ -0.18
SMAD4-216ENST00000593223 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
SMAD4-216ENST00000593223 VASPP50552 380 aaPredicted RBP13.82□□□□□ -0.2
SMAD4-216ENST00000593223 PITPNM1O00562 1244 aa13.81□□□□□ -0.2
SMAD4-216ENST00000593223 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
SMAD4-216ENST00000593223 MIER1Q8N108 512 aa13.75□□□□□ -0.21
SMAD4-216ENST00000593223 PLCD3Q8N3E9 789 aa13.75□□□□□ -0.21
SMAD4-216ENST00000593223 PLEKHG5O94827 1062 aa13.71□□□□□ -0.21
SMAD4-216ENST00000593223 HAX1O00165 279 aa13.7□□□□□ -0.22
SMAD4-216ENST00000593223 FXR2P51116 673 aaKnown RBP eCLIP13.68□□□□□ -0.22
SMAD4-216ENST00000593223 KLHL34Q8N239 644 aa13.65□□□□□ -0.22
SMAD4-216ENST00000593223 IFNLR1Q8IU57 520 aaPredicted RBP13.62□□□□□ -0.23
SMAD4-216ENST00000593223 EVX2Q03828 476 aa13.61□□□□□ -0.23
SMAD4-216ENST00000593223 ZBTB47Q9UFB7 747 aaPredicted RBP13.58□□□□□ -0.24
SMAD4-216ENST00000593223 CREBZFQ9NS37 354 aa13.56□□□□□ -0.24
SMAD4-216ENST00000593223 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
SMAD4-216ENST00000593223 PRKAR2AP13861 404 aaKnown RBP13.5□□□□□ -0.25
SMAD4-216ENST00000593223 SPOCK2Q92563 424 aa13.49□□□□□ -0.25
SMAD4-216ENST00000593223 AMER1Q5JTC6 1135 aaPredicted RBP13.48□□□□□ -0.25
SMAD4-216ENST00000593223 NPM1P06748 294 aaKnown RBP eCLIP13.41□□□□□ -0.26
SMAD4-216ENST00000593223 RTN4Q9NQC3 1192 aaKnown RBP13.41□□□□□ -0.26
SMAD4-216ENST00000593223 MNX1P50219 401 aaPredicted RBP13.39□□□□□ -0.27
SMAD4-216ENST00000593223 FARP1Q9Y4F1 1045 aaPredicted RBP13.38□□□□□ -0.27
SMAD4-216ENST00000593223 CIZ1Q9ULV3 898 aaPredicted RBP13.31□□□□□ -0.28
SMAD4-216ENST00000593223 NUBP1P53384 320 aa13.3□□□□□ -0.28
SMAD4-216ENST00000593223 C19orf67A6NJJ6 358 aa13.27□□□□□ -0.29
SMAD4-216ENST00000593223 DCAF8Q5TAQ9 597 aa13.27□□□□□ -0.29
SMAD4-216ENST00000593223 FAM212AQ96EL1 285 aa13.26□□□□□ -0.29
SMAD4-216ENST00000593223 GSE1Q14687 1217 aa13.24□□□□□ -0.29
SMAD4-216ENST00000593223 RASEFQ8IZ41 740 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms