RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 RFC2P35250 354 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 HSD17B4P51659 736 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 SESTD1Q86VW0 696 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 EMID1Q96A84 441 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-207ENST00000591519 SCLYQ96I15 445 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 UBAC1Q9BSL1 405 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 AMNQ9BXJ7 453 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 SLC28A3Q9HAS3 691 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 VAT1LQ9HCJ6 419 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 SLC4A7Q9Y6M7 1214 aa12.12□□□□□ -0.47
VPS4B-207ENST00000591519 PPP1R3GB7ZBB8 358 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 KLRF2D3W0D1 207 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 OPLAHO14841 1288 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 GH1P01241 217 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 NR3C2P08235 984 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 GSPT1P15170 499 aaKnown RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 ARHGAP1Q07960 439 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 LY6KQ17RY6 165 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 IFIT1BQ5T764 474 aaKnown RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 TTC22Q5TAA0 569 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 STAG2Q8N3U4 1231 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 USP38Q8NB14 1042 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 PHOSPHO2Q8TCD6 241 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 AFG1LQ8WV93 481 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 SYMPKQ92797 1274 aaKnown RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 CTAGE1Q96RT6 745 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 GAS2L1Q99501 681 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 PRDM12Q9H4Q4 367 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 MAD2L2Q9UI95 211 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 DDX41Q9UJV9 622 aaKnown RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 YBX2Q9Y2T7 364 aaKnown RBP12.11□□□□□ -0.47
VPS4B-207ENST00000591519 PCDHA11Q9Y5I1 949 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 KIAA1217Q5T5P2 1943 aa12.11□□□□□ -0.47
VPS4B-207ENST00000591519 MYH6P13533 1939 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 VCANP13611 3396 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 MMP3P08254 477 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 ATP2A2P16615 1042 aaKnown RBP12.1□□□□□ -0.47
VPS4B-207ENST00000591519 CASTP20810 708 aaKnown RBP12.1□□□□□ -0.47
VPS4B-207ENST00000591519 TRAF1Q13077 416 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 BFSP2Q13515 415 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 ADGRE1Q14246 886 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 ARHGEF16Q5VV41 709 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 SEPT14Q6ZU15 432 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 CYB5R4Q7L1T6 521 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 RETREG2Q8NC44 543 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 RUFY2Q8WXA3 655 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 KAT2BQ92831 832 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 NKX2-4Q9H2Z4 354 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 RIOX1Q9H6W3 641 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 PXMP2Q9NR77 195 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 CHD9Q3L8U1 2897 aa12.1□□□□□ -0.47
VPS4B-207ENST00000591519 GBF1Q92538 1859 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 ZBTB5O15062 677 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 DHX16O60231 1041 aaKnown RBP12.09□□□□□ -0.47
VPS4B-207ENST00000591519 PPP1R11O60927 126 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-207ENST00000591519 PPFIA4O75335 1185 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 CFBP00751 764 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 CYP21A2P08686 494 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 ACTN1P12814 892 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 HOXD8P13378 290 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-207ENST00000591519 POU3F3P20264 500 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-207ENST00000591519 CHMLP26374 656 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 RABGGTBP53611 331 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 RBL2Q08999 1139 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 TRDNQ13061 729 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 LAMC2Q13753 1193 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 DGKDQ16760 1214 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 FAM47CQ5HY64 1035 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 KCNV1Q6PIU1 500 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 VSIG10LQ86VR7 867 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 CAGE1Q8TC20 777 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 ATXN2LQ8WWM7 1075 aaKnown RBP12.09□□□□□ -0.47
VPS4B-207ENST00000591519 PDCD2LQ9BRP1 358 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 PCDHA1Q9Y5I3 950 aa12.09□□□□□ -0.47
VPS4B-207ENST00000591519 SCN5AQ14524 2016 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 HAS3O00219 553 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 RGS20O76081 388 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 PARNO95453 639 aaKnown RBP12.08□□□□□ -0.48
VPS4B-207ENST00000591519 TGFB3P10600 412 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 EIF2AK2P19525 551 aaKnown RBP12.08□□□□□ -0.48
VPS4B-207ENST00000591519 PTH1RQ03431 593 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 TROAPQ12815 778 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 GRM4Q14833 912 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 GPNMBQ14956 572 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 PTGISQ16647 500 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 SLC35G1Q2M3R5 365 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 TJAP1Q5JTD0 557 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 GDF6Q6KF10 455 aaPredicted RBP12.08□□□□□ -0.48
VPS4B-207ENST00000591519 DEFB128Q7Z7B8 93 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 SKAP1Q86WV1 359 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 PPTC7Q8NI37 304 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 AFAP1L1Q8TED9 768 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 SLC9A7Q96T83 725 aa12.08□□□□□ -0.48
VPS4B-207ENST00000591519 TRIP12Q14669 1992 aaPredicted RBP12.08□□□□□ -0.48
VPS4B-207ENST00000591519 ZBBXA8MT70 800 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 CYTH3O43739 400 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 BAIAP3O94812 1187 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 F2P00734 622 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 MYOGP15173 224 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms