RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 IFIT5Q13325 482 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 UBE4AQ14139 1066 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 SHROOM1Q2M3G4 852 aaPredicted RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 CWF19L2Q2TBE0 894 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 DNTTIP2Q5QJE6 756 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 USP17L2Q6R6M4 530 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 NOL8Q76FK4 1167 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 PDZD3Q86UT5 571 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 PLEKHM2Q8IWE5 1019 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 PDCL2Q8N4E4 241 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 RETREG2Q8NC44 543 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 SPATA18Q8TC71 538 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 NETO1Q8TDF5 533 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 ZNF594Q96JF6 807 aaPredicted RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 MSLNLQ96KJ4 702 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 BBC3Q96PG8 261 aaPredicted RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 METTL22Q9BUU2 404 aaPredicted RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 IDI2Q9BXS1 227 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 USP25Q9UHP3 1055 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 BARX2Q9UMQ3 279 aaPredicted RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 SORCS3Q9UPU3 1222 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 SUGT1Q9Y2Z0 365 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 ZDHHC9Q9Y397 364 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 SALL1Q9NSC2 1324 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 OTOGLQ3ZCN5 2332 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 LOC400499M0QZD8 3231 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SCN5AQ14524 2016 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 MYH3P11055 1940 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 CDK5RAP2Q96SN8 1893 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ZNF236Q9UL36 1845 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 GRIN2DO15399 1336 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 GOLGA6L6A8MZA4 724 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ARHGAP6O43182 974 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 CTIFO43310 598 aaKnown RBP4.84□□□□□ -1.63
LIG3-211ENST00000588713 ASGR2P07307 311 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ASNSP08243 561 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 IQCF3P0C7M6 154 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SP9P0CG40 484 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 FCER1AP12319 257 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SPINK2P20155 84 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 RFX1P22670 979 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 PRDX5P30044 214 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 GNAI1P63096 354 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SLC20A2Q08357 652 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ADAM15Q13444 863 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 PKP1Q13835 747 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 HIC1Q14526 733 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 NOLC1Q14978 699 aaKnown RBP eCLIP4.84□□□□□ -1.63
LIG3-211ENST00000588713 CAVIN4Q5BKX8 364 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SPECC1Q5M775 1068 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 PLA2G2CQ5R387 149 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SMYD5Q6GMV2 418 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 LDHAL6AQ6ZMR3 332 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 CATSPERGQ6ZRH7 1159 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 TMEM192Q8IY95 271 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 TMEFF1Q8IYR6 380 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ZGPATQ8N5A5 531 aaKnown RBP4.84□□□□□ -1.63
LIG3-211ENST00000588713 ANKRD44Q8N8A2 993 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SLC43A3Q8NBI5 491 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 RDH13Q8NBN7 331 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 MMP19Q99542 508 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 RTP3Q9BQQ7 232 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 SPATC1LQ9H0A9 340 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 ALDH8A1Q9H2A2 487 aaPredicted RBP4.84□□□□□ -1.63
LIG3-211ENST00000588713 OSBPL3Q9H4L5 887 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 DCTPP1Q9H773 170 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 CLEC1BQ9P126 229 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 CGNQ9P2M7 1197 aaKnown RBP4.84□□□□□ -1.63
LIG3-211ENST00000588713 MAP3K2Q9Y2U5 619 aa4.84□□□□□ -1.63
LIG3-211ENST00000588713 USP9XQ93008 2570 aaPredicted RBP4.84□□□□□ -1.64
LIG3-211ENST00000588713 PTPRSQ13332 1948 aa4.84□□□□□ -1.64
LIG3-211ENST00000588713 ATAD5Q96QE3 1844 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 PTPRCP08575 1304 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 CCDC171Q6TFL3 1326 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 CCDC66A2RUB6 948 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 TMEM8BA6NDV4 472 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 ST8SIA5O15466 376 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 PRB1P04280 392 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 IGKV5-2P06315 115 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 SUPT20HL2P0C7V6 817 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 ZNF853P0CG23 659 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 CTNNB1P35222 781 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 GJA9P57773 515 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 JAG1P78504 1218 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 SPEM2Q0P670 501 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 C19orf57Q0VDD7 668 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 COASYQ13057 564 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 GCKRQ14397 625 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 CCDC6Q16204 474 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 FAM47CQ5HY64 1035 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 FBXO33Q7Z6M2 555 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 METTL3Q86U44 580 aaKnown RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 FBXO11Q86XK2 927 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 SIRT2Q8IXJ6 389 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 RPAP2Q8IXW5 612 aaPredicted RBP4.83□□□□□ -1.64
LIG3-211ENST00000588713 MYOCDQ8IZQ8 938 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.83□□□□□ -1.64
LIG3-211ENST00000588713 PPP1R13LQ8WUF5 828 aa4.83□□□□□ -1.64
LIG3-211ENST00000588713 APOL5Q9BWW9 433 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms