RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 GPNMBQ14956 572 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 CREB3L3Q68CJ9 461 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 CMTR1Q8N1G2 835 aaKnown RBP16.58■□□□□ 0.24
VMP1-206ENST00000587945 SRBD1Q8N5C6 995 aaKnown RBP16.58■□□□□ 0.24
VMP1-206ENST00000587945 MAP3K14Q99558 947 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 SPZ1Q9BXG8 430 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 ANO2Q9NQ90 1003 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 PRDM6Q9NQX0 595 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 RTEL1Q9NZ71 1219 aa16.58■□□□□ 0.24
VMP1-206ENST00000587945 HOXD8P13378 290 aaPredicted RBP16.57■□□□□ 0.24
VMP1-206ENST00000587945 IGFBP4P22692 258 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 KIF5BP33176 963 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 MCM5P33992 734 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 HIC1Q14526 733 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 NECTIN1Q15223 517 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 PPP2R2DQ66LE6 453 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 KCNV1Q6PIU1 500 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 USP17L6PQ6QN14 398 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 CAGE1Q8TC20 777 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 AFAP1L1Q8TED9 768 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 WNT8BQ93098 351 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 RRP36Q96EU6 259 aaKnown RBP16.57■□□□□ 0.24
VMP1-206ENST00000587945 KATNAL1Q9BW62 490 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 MLXIPQ9HAP2 919 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 PCDHA11Q9Y5I1 949 aa16.57■□□□□ 0.24
VMP1-206ENST00000587945 VCANP13611 3396 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 hCG_1642624A0A1W2PR95 340 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 CCDC69A6NI79 296 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 PPFIA4O75335 1185 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 TGFB3P10600 412 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 CKBP12277 381 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 SELPP16109 830 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 LRRC8DQ7L1W4 858 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 CCDC155Q8N6L0 562 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 TMEM87BQ96K49 555 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 MTA3Q9BTC8 594 aa16.56■□□□□ 0.24
VMP1-206ENST00000587945 FRMPD4Q14CM0 1322 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CA3P07451 260 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 SEMA3FQ13275 785 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CCDC85BQ15834 202 aaPredicted RBP16.55■□□□□ 0.24
VMP1-206ENST00000587945 TCTN1Q2MV58 587 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 TMTC2Q8N394 836 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CCDC82Q8N4S0 544 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 LZTS2Q9BRK4 669 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 C16orf70Q9BSU1 422 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CERS4Q9HA82 394 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 SEC63Q9UGP8 760 aaKnown RBP16.55■□□□□ 0.24
VMP1-206ENST00000587945 TELO2Q9Y4R8 837 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CUL9Q8IWT3 2517 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 CHD9Q3L8U1 2897 aa16.55■□□□□ 0.24
VMP1-206ENST00000587945 SPATA31C2B4DYI2 1134 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 MEIS2O14770 477 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 NBNO60934 754 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 ARHGEF15O94989 841 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 SMARCA1P28370 1054 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 LIFRP42702 1097 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 GNAQP50148 359 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 RBL2Q08999 1139 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 PTK7Q13308 1070 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 TRIM71Q2Q1W2 868 aaKnown RBP16.54■□□□□ 0.24
VMP1-206ENST00000587945 GNPTABQ3T906 1256 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 CYFIP1Q7L576 1253 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 TMCO2Q7Z6W1 182 aaPredicted RBP16.54■□□□□ 0.24
VMP1-206ENST00000587945 HERC6Q8IVU3 1022 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 SMARCC2Q8TAQ2 1214 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 CUL5Q93034 780 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 INPP4AQ96PE3 977 aaPredicted RBP16.54■□□□□ 0.24
VMP1-206ENST00000587945 SLC9A7Q96T83 725 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 SLC12A7Q9Y666 1083 aa16.54■□□□□ 0.24
VMP1-206ENST00000587945 BAZ2BQ9UIF8 2168 aaKnown RBP16.54■□□□□ 0.24
VMP1-206ENST00000587945 RFXAPO00287 272 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 LGALS2P05162 132 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 ICAM3P32942 547 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 BMP2KLQ5H9B9 411 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 ZNF618Q5T7W0 954 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 TRAF7Q6Q0C0 670 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 PHOSPHO2Q8TCD6 241 aa16.53■□□□□ 0.24
VMP1-206ENST00000587945 EPOPA6NHQ4 379 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 H3BRB1 525 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 PIK3CDO00329 1044 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 NOP56O00567 594 aaKnown RBP16.52■□□□□ 0.24
VMP1-206ENST00000587945 FIBPO43427 364 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 STAM2O75886 525 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 BAIAP3O94812 1187 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 CXCL10P02778 98 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 WDR5P61964 334 aaKnown RBP16.52■□□□□ 0.24
VMP1-206ENST00000587945 SP4Q02446 784 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 NEDD9Q14511 834 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 MBTPS1Q14703 1052 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 METTL7BQ6UX53 244 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 CENPQQ7L2Z9 268 aaPredicted RBP16.52■□□□□ 0.24
VMP1-206ENST00000587945 MICU3Q86XE3 530 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 MICALL1Q8N3F8 863 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 TCEANC2Q96MN5 208 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 TUT1Q9H6E5 874 aaKnown RBP16.52■□□□□ 0.24
VMP1-206ENST00000587945 PSTPIP2Q9H939 334 aa16.52■□□□□ 0.24
VMP1-206ENST00000587945 C17orf102A2RUQ5 167 aa16.51■□□□□ 0.23
VMP1-206ENST00000587945 SMIM10L2AP0DMW4 78 aa16.51■□□□□ 0.23
VMP1-206ENST00000587945 SMIM10L2BP0DMW5 78 aa16.51■□□□□ 0.23
VMP1-206ENST00000587945 CALM1P0DP23 149 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms