RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 MYH6P13533 1939 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 PIEZO1Q92508 2521 aa23.19■■□□□ 1.3
CCDC40-206ENST00000572083 MYH7BA7E2Y1 1941 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 DHX16O60231 1041 aaKnown RBP23.18■■□□□ 1.3
CCDC40-206ENST00000572083 EIF3JO75822 258 aaKnown RBP23.18■■□□□ 1.3
CCDC40-206ENST00000572083 CFBP00751 764 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 AMHP03971 560 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 ALYREFQ86V81 257 aaKnown RBP23.18■■□□□ 1.3
CCDC40-206ENST00000572083 FBXO11Q86XK2 927 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 DGKHQ86XP1 1220 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 UIMC1Q96RL1 719 aa23.18■■□□□ 1.3
CCDC40-206ENST00000572083 RNF41Q9H4P4 317 aaPredicted RBP23.18■■□□□ 1.3
CCDC40-206ENST00000572083 MRPL11Q9Y3B7 192 aaKnown RBP23.18■■□□□ 1.3
CCDC40-206ENST00000572083 LAMA4Q16363 1823 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 EMSYQ7Z589 1322 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 H3BQ06 376 aaPredicted RBP23.17■■□□□ 1.3
CCDC40-206ENST00000572083 NR3C2P08235 984 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 THPOP40225 353 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 HTRA4P83105 476 aaPredicted RBP23.17■■□□□ 1.3
CCDC40-206ENST00000572083 MKRN4PQ13434 485 aaPredicted RBP23.17■■□□□ 1.3
CCDC40-206ENST00000572083 MRPL38Q96DV4 380 aaKnown RBP23.17■■□□□ 1.3
CCDC40-206ENST00000572083 KAT14Q9H8E8 782 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 VAT1LQ9HCJ6 419 aa23.17■■□□□ 1.3
CCDC40-206ENST00000572083 GRXCR2A6NFK2 248 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 HSDL1Q3SXM5 330 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 EPC2Q52LR7 807 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 ASPRV1Q53RT3 343 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 SP7Q8TDD2 431 aaPredicted RBP23.16■■□□□ 1.3
CCDC40-206ENST00000572083 JMJD4Q9H9V9 463 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 C5orf42Q9H799 3197 aa23.16■■□□□ 1.3
CCDC40-206ENST00000572083 RSPH10B2B2RC85 870 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 KDM4AO75164 1064 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 RSPH10BP0C881 870 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 MYCLP12524 364 aaPredicted RBP23.15■■□□□ 1.3
CCDC40-206ENST00000572083 HOXD8P13378 290 aaPredicted RBP23.15■■□□□ 1.3
CCDC40-206ENST00000572083 PTPROQ16827 1216 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 MYSM1Q5VVJ2 828 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 SERINC5Q86VE9 423 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 IQCA1Q86XH1 822 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 NEK9Q8TD19 979 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 SPATA33Q96N06 139 aa23.15■■□□□ 1.3
CCDC40-206ENST00000572083 TRIM6-TRIM34B2RNG4 842 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 OPLAHO14841 1288 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 RGS20O76081 388 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 GGPS1O95749 300 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 TIGD5Q53EQ6 642 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 PLEKHG4Q58EX7 1191 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 EP400NLQ6ZTU2 488 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 YME1L1Q96TA2 773 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 CTNNA3Q9UI47 895 aa23.14■■□□□ 1.29
CCDC40-206ENST00000572083 ZNF213O14771 459 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 UPP2O95045 317 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 PARP1P09874 1014 aaKnown RBP23.13■■□□□ 1.29
CCDC40-206ENST00000572083 ALADP13716 330 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 HSD17B4P51659 736 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 CSPP1Q1MSJ5 1256 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 CELF3Q5SZQ8 465 aaKnown RBP23.13■■□□□ 1.29
CCDC40-206ENST00000572083 ENAHQ8N8S7 591 aaPredicted RBP23.13■■□□□ 1.29
CCDC40-206ENST00000572083 BANK1Q8NDB2 785 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 PDCD2LQ9BRP1 358 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 NLRC5Q86WI3 1866 aa23.13■■□□□ 1.29
CCDC40-206ENST00000572083 C17orf102A2RUQ5 167 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 B4E1Z4 1266 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 PPFIA4O75335 1185 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 CTSHP09668 335 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 UBA1P22314 1058 aaKnown RBP23.12■■□□□ 1.29
CCDC40-206ENST00000572083 GPM6BQ13491 265 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 PUS10Q3MIT2 529 aaKnown RBP23.12■■□□□ 1.29
CCDC40-206ENST00000572083 TCEAL5Q5H9L2 206 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 IL31RAQ8NI17 732 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 ATP6V0A1Q93050 837 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 RILPL2Q969X0 211 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 ZFP91Q96JP5 570 aaPredicted RBP23.12■■□□□ 1.29
CCDC40-206ENST00000572083 SAMD11Q96NU1 681 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 ZSCAN10Q96SZ4 725 aaPredicted RBP23.12■■□□□ 1.29
CCDC40-206ENST00000572083 C16orf70Q9BSU1 422 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 OSBPL7Q9BZF2 842 aa23.12■■□□□ 1.29
CCDC40-206ENST00000572083 H3BNC9 293 aa23.11■■□□□ 1.29
CCDC40-206ENST00000572083 HOXA13P31271 388 aaPredicted RBP23.11■■□□□ 1.29
CCDC40-206ENST00000572083 SP2Q02086 613 aa23.11■■□□□ 1.29
CCDC40-206ENST00000572083 CCDC178Q5BJE1 867 aa23.11■■□□□ 1.29
CCDC40-206ENST00000572083 GPKOWQ92917 476 aaPredicted RBP eCLIP23.11■■□□□ 1.29
CCDC40-206ENST00000572083 COL4A6Q14031 1691 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 DCXO43602 365 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 MFAP1P55081 439 aaKnown RBP23.1■■□□□ 1.29
CCDC40-206ENST00000572083 PGM5Q15124 567 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 TICAM2Q86XR7 235 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 TMEM192Q8IY95 271 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 STAG2Q8N3U4 1231 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 SEPT8Q92599 483 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 ANKS1AQ92625 1134 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 TOP1MTQ969P6 601 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 PABPC5Q96DU9 382 aaKnown RBP23.1■■□□□ 1.29
CCDC40-206ENST00000572083 AMNQ9BXJ7 453 aa23.1■■□□□ 1.29
CCDC40-206ENST00000572083 TRIOO75962 3097 aa23.09■■□□□ 1.29
CCDC40-206ENST00000572083 TREHO43280 583 aa23.09■■□□□ 1.29
CCDC40-206ENST00000572083 PPP1R11O60927 126 aaPredicted RBP23.09■■□□□ 1.29
CCDC40-206ENST00000572083 SMIM10L2AP0DMW4 78 aa23.09■■□□□ 1.29
CCDC40-206ENST00000572083 SMIM10L2BP0DMW5 78 aa23.09■■□□□ 1.29
CCDC40-206ENST00000572083 ZP2Q05996 745 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms