RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GNAQP50148 359 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 EXOSC10Q01780 885 aaKnown RBP12.5□□□□□ -0.41
VPS39-208ENST00000564994 SEMA3FQ13275 785 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 GRIN2CQ14957 1233 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 PTGISQ16647 500 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 ADCK5Q3MIX3 580 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 CELF3Q5SZQ8 465 aaKnown RBP12.5□□□□□ -0.41
VPS39-208ENST00000564994 KCNV1Q6PIU1 500 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 SGMS1Q86VZ5 419 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 FANCBQ8NB91 859 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 TIFAQ96CG3 184 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 SLC12A7Q9Y666 1083 aa12.5□□□□□ -0.41
VPS39-208ENST00000564994 PIK3CDO00329 1044 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 PITPNM1O00562 1244 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 TGFB3P10600 412 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 PSEN2P49810 448 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 HIC1Q14526 733 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 TSGA10IPQ3SY00 556 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 RNF20Q5VTR2 975 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 TMTC3Q6ZXV5 915 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 DEFB128Q7Z7B8 93 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 RPUSD2Q8IZ73 545 aaKnown RBP12.49□□□□□ -0.41
VPS39-208ENST00000564994 CCDC82Q8N4S0 544 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 DHX38Q92620 1227 aaKnown RBP12.49□□□□□ -0.41
VPS39-208ENST00000564994 INPP4AQ96PE3 977 aaPredicted RBP12.49□□□□□ -0.41
VPS39-208ENST00000564994 NEK1Q96PY6 1258 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 ALG1Q9BT22 464 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 ZNF576Q9H609 170 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 RTEL1Q9NZ71 1219 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 HDAC6Q9UBN7 1215 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 SEC63Q9UGP8 760 aaKnown RBP12.49□□□□□ -0.41
VPS39-208ENST00000564994 GTF2IRD1Q9UHL9 959 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 BRPF3Q9ULD4 1205 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 NOD1Q9Y239 953 aa12.49□□□□□ -0.41
VPS39-208ENST00000564994 SPATA31C2B4DYI2 1134 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 PPFIA4O75335 1185 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 ICAM3P32942 547 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 MFSD10Q14728 455 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 GPNMBQ14956 572 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 KIAA0753Q2KHM9 967 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 APOA5Q6Q788 366 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 DHX32Q7L7V1 743 aaKnown RBP12.48□□□□□ -0.41
VPS39-208ENST00000564994 SMARCC2Q8TAQ2 1214 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 CCDC136Q96JN2 1154 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 SPATA33Q96N06 139 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 C16orf70Q9BSU1 422 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 MTIF3Q9H2K0 278 aaKnown RBP12.48□□□□□ -0.41
VPS39-208ENST00000564994 YBX2Q9Y2T7 364 aaKnown RBP12.48□□□□□ -0.41
VPS39-208ENST00000564994 TELO2Q9Y4R8 837 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 TRANK1O15050 2925 aa12.48□□□□□ -0.41
VPS39-208ENST00000564994 CNTNAP5Q8WYK1 1306 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 STAM2O75886 525 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 PFKMP08237 780 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 FOSL2P15408 326 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 RFC2P35250 354 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 RABGGTBP53611 331 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 ZNF200P98182 395 aaPredicted RBP12.47□□□□□ -0.41
VPS39-208ENST00000564994 BFSP2Q13515 415 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 UBE2SQ16763 222 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 GNPTABQ3T906 1256 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 PCNX4Q63HM2 1172 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 C7orf31Q8N865 590 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 RETREG2Q8NC44 543 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 MAFAQ8NHW3 353 aaPredicted RBP12.47□□□□□ -0.41
VPS39-208ENST00000564994 WNT8BQ93098 351 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 KATNAL1Q9BW62 490 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 PSTPIP2Q9H939 334 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 MLXIPQ9HAP2 919 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 SLC4A7Q9Y6M7 1214 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 KAT6AQ92794 2004 aa12.47□□□□□ -0.41
VPS39-208ENST00000564994 REV3LO60673 3130 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 ZBBXA8MT70 800 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 FIBPO43427 364 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 CPA1P15085 419 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 MYOGP15173 224 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 RBL2Q08999 1139 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 FUT2Q10981 343 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 RAB30Q15771 203 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 TRIM71Q2Q1W2 868 aaKnown RBP12.46□□□□□ -0.41
VPS39-208ENST00000564994 TYW1BQ6NUM6 668 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 TRAF7Q6Q0C0 670 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 METTL7BQ6UX53 244 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 CYFIP1Q7L576 1253 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 CAGE1Q8TC20 777 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 AFAP1L1Q8TED9 768 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 KCNB2Q92953 911 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 CUL5Q93034 780 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 NKX2-4Q9H2Z4 354 aa12.46□□□□□ -0.41
VPS39-208ENST00000564994 FAM217BQ9NTX9 383 aaPredicted RBP12.46□□□□□ -0.41
VPS39-208ENST00000564994 SPTBN5Q9NRC6 3674 aaKnown RBP12.46□□□□□ -0.42
VPS39-208ENST00000564994 ZBTB43O43298 467 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 ATP9AO75110 1047 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 LGALS2P05162 132 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 CKBP12277 381 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 ATP2A2P16615 1042 aaKnown RBP12.45□□□□□ -0.42
VPS39-208ENST00000564994 CDC27P30260 824 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 HSPA4P34932 840 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 NEDD9Q14511 834 aa12.45□□□□□ -0.42
VPS39-208ENST00000564994 KRT32Q14532 448 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms