RNA–Protein interactions for RNA: ENST00000564252.1

NME3-206, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 599 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-206ENST00000564252 ALG1Q9BT22 464 aa27.66■■■□□ 2.02
NME3-206ENST00000564252 RBM8AQ9Y5S9 174 aaKnown RBP27.66■■■□□ 2.02
NME3-206ENST00000564252 BAIAP3O94812 1187 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 GGPS1O95749 300 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 CA3P07451 260 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 SELPP16109 830 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 UBA1P22314 1058 aaKnown RBP27.65■■■□□ 2.02
NME3-206ENST00000564252 HSDL1Q3SXM5 330 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 TJAP1Q5JTD0 557 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 FCHSD1Q86WN1 690 aa27.65■■■□□ 2.02
NME3-206ENST00000564252 SYMPKQ92797 1274 aaKnown RBP27.65■■■□□ 2.02
NME3-206ENST00000564252 GPKOWQ92917 476 aaPredicted RBP eCLIP27.65■■■□□ 2.02
NME3-206ENST00000564252 ZFP91Q96JP5 570 aaPredicted RBP27.65■■■□□ 2.02
NME3-206ENST00000564252 SORBS3O60504 671 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 PPFIA4O75335 1185 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 TGFB3P10600 412 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 LRRC8DQ7L1W4 858 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 SPATA33Q96N06 139 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 PTPRSQ13332 1948 aa27.64■■■□□ 2.02
NME3-206ENST00000564252 FRMPD4Q14CM0 1322 aa27.64■■■□□ 2.01
NME3-206ENST00000564252 CKBP12277 381 aa27.63■■■□□ 2.01
NME3-206ENST00000564252 CCDC85BQ15834 202 aaPredicted RBP27.63■■■□□ 2.01
NME3-206ENST00000564252 HERC6Q8IVU3 1022 aa27.63■■■□□ 2.01
NME3-206ENST00000564252 MAP3K14Q99558 947 aa27.63■■■□□ 2.01
NME3-206ENST00000564252 LY9Q9HBG7 655 aa27.63■■■□□ 2.01
NME3-206ENST00000564252 XIRP2A4UGR9 3374 aa27.62■■■□□ 2.01
NME3-206ENST00000564252 PIBF1Q8WXW3 757 aa27.62■■■□□ 2.01
NME3-206ENST00000564252 THEGQ9P2T0 379 aa27.62■■■□□ 2.01
NME3-206ENST00000564252 PARNO95453 639 aaKnown RBP27.61■■■□□ 2.01
NME3-206ENST00000564252 CXCL10P02778 98 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 PTK7Q13308 1070 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 HIC1Q14526 733 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 TRIM71Q2Q1W2 868 aaKnown RBP27.61■■■□□ 2.01
NME3-206ENST00000564252 ZNF654Q8IZM8 581 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 ATXN2LQ8WWM7 1075 aaKnown RBP27.61■■■□□ 2.01
NME3-206ENST00000564252 WNT8BQ93098 351 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 MYL10Q9BUA6 226 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 SPZ1Q9BXG8 430 aa27.61■■■□□ 2.01
NME3-206ENST00000564252 NBNO60934 754 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 DDAH1O94760 285 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 ARHGEF15O94989 841 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 WDR5P61964 334 aaKnown RBP27.6■■■□□ 2.01
NME3-206ENST00000564252 MRPS9P82933 396 aaKnown RBP27.6■■■□□ 2.01
NME3-206ENST00000564252 ZNF200P98182 395 aaPredicted RBP27.6■■■□□ 2.01
NME3-206ENST00000564252 TRAF7Q6Q0C0 670 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 C16orf70Q9BSU1 422 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 MTA3Q9BTC8 594 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 LSG1Q9H089 658 aaKnown RBP27.6■■■□□ 2.01
NME3-206ENST00000564252 BCAS3Q9H6U6 928 aa27.6■■■□□ 2.01
NME3-206ENST00000564252 KCNJ6P48051 423 aa27.59■■■□□ 2.01
NME3-206ENST00000564252 CNKSR3Q6P9H4 555 aa27.59■■■□□ 2.01
NME3-206ENST00000564252 CTCFLQ8NI51 663 aaPredicted RBP27.59■■■□□ 2.01
NME3-206ENST00000564252 INPP4AQ96PE3 977 aaPredicted RBP27.59■■■□□ 2.01
NME3-206ENST00000564252 MLXIPQ9HAP2 919 aa27.59■■■□□ 2.01
NME3-206ENST00000564252 EPOPA6NHQ4 379 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 PRC1O43663 620 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 STAM2O75886 525 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 ICAM3P32942 547 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 TAP1Q03518 808 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 COL9A3Q14050 684 aaPredicted RBP27.58■■■□□ 2.01
NME3-206ENST00000564252 TCTN1Q2MV58 587 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 GNPTABQ3T906 1256 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 CASC1Q6TDU7 716 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 CERS4Q9HA82 394 aa27.58■■■□□ 2.01
NME3-206ENST00000564252 KIF28PB7ZC32 967 aa27.57■■■□□ 2
NME3-206ENST00000564252 RFXAPO00287 272 aa27.57■■■□□ 2
NME3-206ENST00000564252 POU3F3P20264 500 aaPredicted RBP27.57■■■□□ 2
NME3-206ENST00000564252 SMARCA1P28370 1054 aa27.57■■■□□ 2
NME3-206ENST00000564252 KIF5BP33176 963 aa27.57■■■□□ 2
NME3-206ENST00000564252 SEMA3FQ13275 785 aa27.57■■■□□ 2
NME3-206ENST00000564252 ZNF618Q5T7W0 954 aa27.57■■■□□ 2
NME3-206ENST00000564252 RRP36Q96EU6 259 aaKnown RBP27.57■■■□□ 2
NME3-206ENST00000564252 SPATA31C2B4DYI2 1134 aa27.56■■■□□ 2
NME3-206ENST00000564252 SH2B2O14492 632 aaPredicted RBP27.56■■■□□ 2
NME3-206ENST00000564252 MCM5P33992 734 aa27.56■■■□□ 2
NME3-206ENST00000564252 DEFB103AP81534 67 aa27.56■■■□□ 2
NME3-206ENST00000564252 MBTPS1Q14703 1052 aa27.56■■■□□ 2
NME3-206ENST00000564252 ASB2Q96Q27 587 aa27.56■■■□□ 2
NME3-206ENST00000564252 H3BRB1 525 aa27.55■■■□□ 2
NME3-206ENST00000564252 RBAK-RBAKDNI3L0D1 243 aa27.55■■■□□ 2
NME3-206ENST00000564252 TLL1O43897 1013 aa27.55■■■□□ 2
NME3-206ENST00000564252 PLEKHA8P1O95397 391 aa27.55■■■□□ 2
NME3-206ENST00000564252 LGALS2P05162 132 aa27.55■■■□□ 2
NME3-206ENST00000564252 HOXC8P31273 242 aa27.55■■■□□ 2
NME3-206ENST00000564252 USP17L6PQ6QN14 398 aa27.55■■■□□ 2
NME3-206ENST00000564252 TMCO2Q7Z6W1 182 aaPredicted RBP27.55■■■□□ 2
NME3-206ENST00000564252 SERINC5Q86VE9 423 aa27.55■■■□□ 2
NME3-206ENST00000564252 MICALL1Q8N3F8 863 aa27.55■■■□□ 2
NME3-206ENST00000564252 TMEM87BQ96K49 555 aa27.55■■■□□ 2
NME3-206ENST00000564252 LZTS2Q9BRK4 669 aa27.55■■■□□ 2
NME3-206ENST00000564252 ESYT1Q9BSJ8 1104 aa27.55■■■□□ 2
NME3-206ENST00000564252 TUT1Q9H6E5 874 aaKnown RBP27.55■■■□□ 2
NME3-206ENST00000564252 MTCH2Q9Y6C9 303 aa27.55■■■□□ 2
NME3-206ENST00000564252 DOCK5Q9H7D0 1870 aa27.55■■■□□ 2
NME3-206ENST00000564252 PRRC2BQ5JSZ5 2229 aaKnown RBP27.55■■■□□ 2
NME3-206ENST00000564252 PIK3CDO00329 1044 aa27.54■■■□□ 2
NME3-206ENST00000564252 MEIS2O14770 477 aa27.54■■■□□ 2
NME3-206ENST00000564252 SLC27A2O14975 620 aa27.54■■■□□ 2
NME3-206ENST00000564252 MRPS5P82675 430 aaKnown RBP27.54■■■□□ 2
NME3-206ENST00000564252 METTL7BQ6UX53 244 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms