RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 FCHSD1Q86WN1 690 aa18.25■□□□□ 0.51
CLK3-211ENST00000563297 C7orf31Q8N865 590 aa18.25■□□□□ 0.51
CLK3-211ENST00000563297 KATNAL1Q9BW62 490 aa18.25■□□□□ 0.51
CLK3-211ENST00000563297 SORBS3O60504 671 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 GGPS1O95749 300 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 ZNF286BP0CG31 522 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 CKBP12277 381 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 SELPP16109 830 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 LRRC8DQ7L1W4 858 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 CATIPQ7Z7H3 387 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 HERC6Q8IVU3 1022 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 MB21D2Q8IYB1 491 aaPredicted RBP18.24■□□□□ 0.51
CLK3-211ENST00000563297 ATXN2LQ8WWM7 1075 aaKnown RBP18.24■□□□□ 0.51
CLK3-211ENST00000563297 GPKOWQ92917 476 aaPredicted RBP eCLIP18.24■□□□□ 0.51
CLK3-211ENST00000563297 SPATA33Q96N06 139 aa18.24■□□□□ 0.51
CLK3-211ENST00000563297 PRRC2BQ5JSZ5 2229 aaKnown RBP18.24■□□□□ 0.51
CLK3-211ENST00000563297 RFXAPO00287 272 aa18.23■□□□□ 0.51
CLK3-211ENST00000563297 BAIAP3O94812 1187 aa18.23■□□□□ 0.51
CLK3-211ENST00000563297 CCND2P30279 289 aa18.23■□□□□ 0.51
CLK3-211ENST00000563297 ZNF200P98182 395 aaPredicted RBP18.23■□□□□ 0.51
CLK3-211ENST00000563297 BCAS3Q9H6U6 928 aa18.23■□□□□ 0.51
CLK3-211ENST00000563297 RBM8AQ9Y5S9 174 aaKnown RBP18.23■□□□□ 0.51
CLK3-211ENST00000563297 KIF28PB7ZC32 967 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 NBNO60934 754 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 ARHGEF15O94989 841 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 PARNO95453 639 aaKnown RBP18.22■□□□□ 0.51
CLK3-211ENST00000563297 CXCL10P02778 98 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 UBA1P22314 1058 aaKnown RBP18.22■□□□□ 0.51
CLK3-211ENST00000563297 PTK7Q13308 1070 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 HIC1Q14526 733 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 TRIM71Q2Q1W2 868 aaKnown RBP18.22■□□□□ 0.51
CLK3-211ENST00000563297 PIBF1Q8WXW3 757 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 ASB2Q96Q27 587 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 MAP3K14Q99558 947 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 C16orf70Q9BSU1 422 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 CERS4Q9HA82 394 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 MLXIPQ9HAP2 919 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 THEGQ9P2T0 379 aa18.22■□□□□ 0.51
CLK3-211ENST00000563297 POU3F3P20264 500 aaPredicted RBP18.21■□□□□ 0.51
CLK3-211ENST00000563297 MRPS9P82933 396 aaKnown RBP18.21■□□□□ 0.51
CLK3-211ENST00000563297 TAP1Q03518 808 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 TCTN1Q2MV58 587 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 TRAF7Q6Q0C0 670 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 WNT8BQ93098 351 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 LY9Q9HBG7 655 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 PTPRSQ13332 1948 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 TRANK1O15050 2925 aa18.21■□□□□ 0.51
CLK3-211ENST00000563297 REV3LO60673 3130 aa18.21■□□□□ 0.5
CLK3-211ENST00000563297 NCOR1O75376 2440 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 EPOPA6NHQ4 379 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 RBAK-RBAKDNI3L0D1 243 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 ICAM3P32942 547 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 KCNJ6P48051 423 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 WDR5P61964 334 aaKnown RBP18.2■□□□□ 0.5
CLK3-211ENST00000563297 MRPS5P82675 430 aaKnown RBP18.2■□□□□ 0.5
CLK3-211ENST00000563297 ZNF618Q5T7W0 954 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 CNKSR3Q6P9H4 555 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 SPZ1Q9BXG8 430 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 FRMPD4Q14CM0 1322 aa18.2■□□□□ 0.5
CLK3-211ENST00000563297 SPATA31C2B4DYI2 1134 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 TLL1O43897 1013 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 SMARCA1P28370 1054 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 TMCO2Q7Z6W1 182 aaPredicted RBP18.19■□□□□ 0.5
CLK3-211ENST00000563297 ZNF654Q8IZM8 581 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 MICALL1Q8N3F8 863 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 INPP4AQ96PE3 977 aaPredicted RBP18.19■□□□□ 0.5
CLK3-211ENST00000563297 MTA3Q9BTC8 594 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 MYL10Q9BUA6 226 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 RTEL1Q9NZ71 1219 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 MTCH2Q9Y6C9 303 aa18.19■□□□□ 0.5
CLK3-211ENST00000563297 ABHD14A-ACY1A0A1B0GW23 586 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 H3BRB1 525 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 PRC1O43663 620 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 STAM2O75886 525 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 DEFB103AP81534 67 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 SEMA3FQ13275 785 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 COL9A3Q14050 684 aaPredicted RBP18.18■□□□□ 0.5
CLK3-211ENST00000563297 MBTPS1Q14703 1052 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 USP17L6PQ6QN14 398 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 SPRED2Q7Z698 418 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 TMTC2Q8N394 836 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 CTCFLQ8NI51 663 aaPredicted RBP18.18■□□□□ 0.5
CLK3-211ENST00000563297 ARNTL2Q8WYA1 636 aa18.18■□□□□ 0.5
CLK3-211ENST00000563297 RRP36Q96EU6 259 aaKnown RBP18.18■□□□□ 0.5
CLK3-211ENST00000563297 LSG1Q9H089 658 aaKnown RBP18.18■□□□□ 0.5
CLK3-211ENST00000563297 TUT1Q9H6E5 874 aaKnown RBP18.18■□□□□ 0.5
CLK3-211ENST00000563297 LCHNA4D1U4 455 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 MEIS2O14770 477 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 DDAH1O94760 285 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 KIF5BP33176 963 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 MCM5P33992 734 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 IKBKEQ14164 716 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 GNPTABQ3T906 1256 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 KRT40Q6A162 431 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 CASC1Q6TDU7 716 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 CYFIP1Q7L576 1253 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 SERINC5Q86VE9 423 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 SRBD1Q8N5C6 995 aaKnown RBP18.17■□□□□ 0.5
CLK3-211ENST00000563297 ZBED2Q9BTP6 218 aa18.17■□□□□ 0.5
CLK3-211ENST00000563297 TSPYL2Q9H2G4 693 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms