RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CRYGNQ8WXF5 182 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 MRPS27Q92552 414 aaKnown RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 SYAP1Q96A49 352 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 TEKT3Q9BXF9 490 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 JADE2Q9NQC1 790 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 TBC1D22BQ9NU19 505 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 PCDHA12Q9UN75 941 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 SRPRBQ9Y5M8 271 aaKnown RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 KDM3AQ9Y4C1 1321 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 SOWAHBA6NEL2 793 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 FAM86B1E9PN63 330 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 IPO5O00410 1097 aaKnown RBP12.63□□□□□ -0.39
SHMT2-220ENST00000555634 FAM86B2P0C5J1 330 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 EDNRBP24530 442 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 UBA7P41226 1012 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 IRF5Q13568 498 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 TTLL4Q14679 1199 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 PTPAQ15257 358 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 SKOR2Q2VWA4 1001 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-220ENST00000555634 ZNF792Q3KQV3 632 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 MORN1Q5T089 497 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 MFSD14CQ5VZR4 134 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
SHMT2-220ENST00000555634 IL31RAQ8NI17 732 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 SCFD2Q8WU76 684 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 MAML3Q96JK9 1138 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 MBOAT7Q96N66 472 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 INPP4AQ96PE3 977 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-220ENST00000555634 RIT2Q99578 217 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 ABHD16BQ9H3Z7 469 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 TTC12Q9H892 705 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-220ENST00000555634 CCDC39Q9UFE4 941 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 UBIAD1Q9Y5Z9 338 aa12.63□□□□□ -0.39
SHMT2-220ENST00000555634 ARID2Q68CP9 1835 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 A0A1W2PQ27 194 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 A0A1W2PQ64 194 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 A0A1W2PQD8 194 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 MEIS1O00470 390 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 HOXC6P09630 235 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 TGFB3P10600 412 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 XRCC5P13010 732 aaKnown RBP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 CYP2B6P20813 491 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 FXR2P51116 673 aaKnown RBP eCLIP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 KRT76Q01546 638 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 NEDD9Q14511 834 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 TPRNQ4KMQ1 711 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 KRT79Q5XKE5 535 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 OLFML2BQ68BL8 750 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 ADALQ6DHV7 355 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 MAMDC4Q6UXC1 1216 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 SEPT14Q6ZU15 432 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 CD99L2Q8TCZ2 262 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 RAET1EQ8TD07 263 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 NEK9Q8TD19 979 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 CALML4Q96GE6 196 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 TRIM47Q96LD4 638 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 TINF2Q9BSI4 451 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 KCNMB3Q9NPA1 279 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 KCNH7Q9NS40 1196 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 LRWD1Q9UFC0 647 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 HOOK1Q9UJC3 728 aaKnown RBP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 FBXO2Q9UK22 296 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 ZHX1Q9UKY1 873 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-220ENST00000555634 SAMM50Q9Y512 469 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 FRMPD3Q5JV73 1810 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 PCNTO95613 3336 aa12.62□□□□□ -0.39
SHMT2-220ENST00000555634 IGLV3-22A0A075B6J6 115 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 NOP56O00567 594 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 MSH4O15457 936 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 SLC26A4O43511 780 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 DKC1O60832 514 aaKnown RBP eCLIP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 KINO60870 393 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 ITGB5P18084 799 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 SFNP31947 248 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 TECP42680 631 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 JAK3P52333 1124 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 MRPS9P82933 396 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 NCAPH2Q6IBW4 605 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 TNS4Q8IZW8 715 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 FSIP1Q8NA03 581 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 ETNPPLQ8TBG4 499 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 MORC4Q8TE76 937 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 CCDC43Q96MW1 224 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 PURBQ96QR8 312 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 AGO4Q9HCK5 861 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 JPH1Q9HDC5 661 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 NRBP1Q9UHY1 535 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 PCDHA7Q9UN72 937 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 DDX49Q9Y6V7 483 aaKnown RBP12.61□□□□□ -0.39
SHMT2-220ENST00000555634 NFASCO94856 1347 aa12.61□□□□□ -0.39
SHMT2-220ENST00000555634 WDR64B1ANS9 1081 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 NKRFO15226 690 aaKnown RBP eCLIP12.6□□□□□ -0.39
SHMT2-220ENST00000555634 CHMP2AO43633 222 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 COBLO75128 1261 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 CMA1P23946 247 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 PRKCZQ05513 592 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 PDIA5Q14554 519 aa12.6□□□□□ -0.39
SHMT2-220ENST00000555634 BRDTQ58F21 947 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-220ENST00000555634 EEPD1Q7L9B9 569 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms