RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 TROAPQ12815 778 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 HIC1Q14526 733 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 TCTN1Q2MV58 587 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 CELF3Q5SZQ8 465 aaKnown RBP13.3□□□□□ -0.28
NEK3-204ENST00000552973 MYSM1Q5VVJ2 828 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 EMID1Q96A84 441 aaPredicted RBP13.3□□□□□ -0.28
NEK3-204ENST00000552973 KATNAL1Q9BW62 490 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 MLXIPQ9HAP2 919 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 RTEL1Q9NZ71 1219 aa13.3□□□□□ -0.28
NEK3-204ENST00000552973 EYSQ5T1H1 3165 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 PNMA6FA0A0J9YX94 578 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 LCHNA4D1U4 455 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 HAS3O00219 553 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 TNFRSF10AO00220 468 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 BAIAP3O94812 1187 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 F2P00734 622 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 UBA1P22314 1058 aaKnown RBP13.29□□□□□ -0.28
NEK3-204ENST00000552973 CCND2P30279 289 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 ANTXR2P58335 489 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 WDR5P61964 334 aaKnown RBP13.29□□□□□ -0.28
NEK3-204ENST00000552973 DEFB103AP81534 67 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 TFF2Q03403 129 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 ZNF618Q5T7W0 954 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 CATIPQ7Z7H3 387 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 ZBED2Q9BTP6 218 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 MYL10Q9BUA6 226 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 MAP3K20Q9NYL2 800 aaKnown RBP13.29□□□□□ -0.28
NEK3-204ENST00000552973 MTCH2Q9Y6C9 303 aa13.29□□□□□ -0.28
NEK3-204ENST00000552973 SGSM2O43147 1006 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 GTPBP6O43824 516 aaPredicted RBP13.28□□□□□ -0.28
NEK3-204ENST00000552973 PPFIA4O75335 1185 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 PTK7Q13308 1070 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 SART3Q15020 963 aaKnown RBP13.28□□□□□ -0.28
NEK3-204ENST00000552973 TRIM71Q2Q1W2 868 aaKnown RBP13.28□□□□□ -0.28
NEK3-204ENST00000552973 FAM117BQ6P1L5 589 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 CNKSR3Q6P9H4 555 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 KCNV1Q6PIU1 500 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 IL27Q8NEV9 243 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 IGDCC4Q8TDY8 1250 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 ADAMTS19Q8TE59 1207 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 C16orf70Q9BSU1 422 aa13.28□□□□□ -0.28
NEK3-204ENST00000552973 TSPYL2Q9H2G4 693 aaPredicted RBP13.28□□□□□ -0.28
NEK3-204ENST00000552973 SCN10AQ9Y5Y9 1956 aa13.27□□□□□ -0.28
NEK3-204ENST00000552973 CXCL10P02778 98 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 HOXD8P13378 290 aaPredicted RBP13.27□□□□□ -0.29
NEK3-204ENST00000552973 THPOP40225 353 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 MRPS9P82933 396 aaKnown RBP13.27□□□□□ -0.29
NEK3-204ENST00000552973 TRAF1Q13077 416 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 TRAF7Q6Q0C0 670 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 MB21D2Q8IYB1 491 aaPredicted RBP13.27□□□□□ -0.29
NEK3-204ENST00000552973 SAMD3Q8N6K7 520 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 MAP4K1Q92918 833 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 NECAB3Q96P71 396 aaPredicted RBP13.27□□□□□ -0.29
NEK3-204ENST00000552973 MTUS1Q9ULD2 1270 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 TELO2Q9Y4R8 837 aa13.27□□□□□ -0.29
NEK3-204ENST00000552973 RBM8AQ9Y5S9 174 aaKnown RBP13.27□□□□□ -0.29
NEK3-204ENST00000552973 TGFB3P10600 412 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 RXRAP19793 462 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 KCNQ1P51787 676 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 SP4Q02446 784 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 RBL2Q08999 1139 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 GRB10Q13322 594 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 COL9A3Q14050 684 aaPredicted RBP13.26□□□□□ -0.29
NEK3-204ENST00000552973 MBTPS1Q14703 1052 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 USP17L6PQ6QN14 398 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.26□□□□□ -0.29
NEK3-204ENST00000552973 CYFIP1Q7L576 1253 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 RAB11FIP4Q86YS3 637 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 CMTR1Q8N1G2 835 aaKnown RBP13.26□□□□□ -0.29
NEK3-204ENST00000552973 ATP6V0A1Q93050 837 aa13.26□□□□□ -0.29
NEK3-204ENST00000552973 UHRF1Q96T88 793 aaPredicted RBP13.26□□□□□ -0.29
NEK3-204ENST00000552973 SCN5AQ14524 2016 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 LAMA4Q16363 1823 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 ABHD14A-ACY1A0A1B0GW23 586 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 C17orf102A2RUQ5 167 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 H3BRB1 525 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 NOP56O00567 594 aaKnown RBP13.25□□□□□ -0.29
NEK3-204ENST00000552973 TREHO43280 583 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 PARNO95453 639 aaKnown RBP13.25□□□□□ -0.29
NEK3-204ENST00000552973 LGALS2P05162 132 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 SMIM10L2AP0DMW4 78 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 SMIM10L2BP0DMW5 78 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 SEMA3FQ13275 785 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 IKBKEQ14164 716 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 GNPTABQ3T906 1256 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 UTP14CQ5TAP6 766 aaKnown RBP13.25□□□□□ -0.29
NEK3-204ENST00000552973 NFXL1Q6ZNB6 911 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 ZNF654Q8IZM8 581 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 DBF4BQ8NFT6 615 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 CTCFLQ8NI51 663 aaPredicted RBP13.25□□□□□ -0.29
NEK3-204ENST00000552973 SMARCC2Q8TAQ2 1214 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 RNPEPQ9H4A4 650 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 TUT1Q9H6E5 874 aaKnown RBP13.25□□□□□ -0.29
NEK3-204ENST00000552973 LY9Q9HBG7 655 aa13.25□□□□□ -0.29
NEK3-204ENST00000552973 hCG_1642624A0A1W2PR95 340 aa13.24□□□□□ -0.29
NEK3-204ENST00000552973 RSPH10B2B2RC85 870 aa13.24□□□□□ -0.29
NEK3-204ENST00000552973 SPATA31C2B4DYI2 1134 aa13.24□□□□□ -0.29
NEK3-204ENST00000552973 PRC1O43663 620 aa13.24□□□□□ -0.29
NEK3-204ENST00000552973 LPXNO60711 386 aa13.24□□□□□ -0.29
NEK3-204ENST00000552973 LGR5O75473 907 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms