RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 RAD9AQ99638 391 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 VAT1LQ9HCJ6 419 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 MRVI1Q9Y6F6 885 aa13.78□□□□□ -0.2
CKAP4-202ENST00000552828 LCHNA4D1U4 455 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 PALM3A6NDB9 673 aaPredicted RBP13.77□□□□□ -0.21
CKAP4-202ENST00000552828 DHX16O60231 1041 aaKnown RBP13.77□□□□□ -0.21
CKAP4-202ENST00000552828 PPP1R11O60927 126 aaPredicted RBP13.77□□□□□ -0.21
CKAP4-202ENST00000552828 GJB5O95377 273 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 CFBP00751 764 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 TGFB3P10600 412 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 DEFB103AP81534 67 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 SEC23AQ15436 765 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 KIAA0753Q2KHM9 967 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 TCTN1Q2MV58 587 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 DHX37Q8IY37 1157 aaKnown RBP13.77□□□□□ -0.21
CKAP4-202ENST00000552828 STAG2Q8N3U4 1231 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 TET1Q8NFU7 2136 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 HLA-CQ95604 372 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 PDCD2LQ9BRP1 358 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 UBAC1Q9BSL1 405 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 C1QTNF1Q9BXJ1 281 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 MAD2L2Q9UI95 211 aa13.77□□□□□ -0.21
CKAP4-202ENST00000552828 KLRF2D3W0D1 207 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ZBTB5O15062 677 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ZNF286BP0CG31 522 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ERVK-21P61565 698 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
CKAP4-202ENST00000552828 IKBKEQ14164 716 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 MBTPS1Q14703 1052 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 CELF3Q5SZQ8 465 aaKnown RBP13.76□□□□□ -0.21
CKAP4-202ENST00000552828 IFIT1BQ5T764 474 aaKnown RBP13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ZNF618Q5T7W0 954 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 TMCO2Q7Z6W1 182 aaPredicted RBP13.76□□□□□ -0.21
CKAP4-202ENST00000552828 WNT8BQ93098 351 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ALG1Q9BT22 464 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 ZBED2Q9BTP6 218 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 PCDHA1Q9Y5I3 950 aa13.76□□□□□ -0.21
CKAP4-202ENST00000552828 EMSYQ7Z589 1322 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 HOXC8P31273 242 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 SP2Q02086 613 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 HIC1Q14526 733 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 PGM5Q15124 567 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 SLC35G1Q2M3R5 365 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 HSDL1Q3SXM5 330 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 SERINC5Q86VE9 423 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 C16orf70Q9BSU1 422 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 RIOX1Q9H6W3 641 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 SUGCTQ9HAC7 445 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 RAPGEFL1Q9UHV5 662 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 LAMA4Q16363 1823 aa13.75□□□□□ -0.21
CKAP4-202ENST00000552828 LINC01553A4QN01 128 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 LGR5O75473 907 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 MYCLP12524 364 aaPredicted RBP13.74□□□□□ -0.21
CKAP4-202ENST00000552828 ZNF200P98182 395 aaPredicted RBP13.74□□□□□ -0.21
CKAP4-202ENST00000552828 TRAF1Q13077 416 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 SKAP1Q86WV1 359 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 IL31RAQ8NI17 732 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 SPATA33Q96N06 139 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 TGS1Q96RS0 853 aaKnown RBP13.74□□□□□ -0.21
CKAP4-202ENST00000552828 IL25Q9H293 177 aa13.74□□□□□ -0.21
CKAP4-202ENST00000552828 KIAA1217Q5T5P2 1943 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 GGPS1O95749 300 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 UBA1P22314 1058 aaKnown RBP13.73□□□□□ -0.21
CKAP4-202ENST00000552828 HOXA13P31271 388 aaPredicted RBP13.73□□□□□ -0.21
CKAP4-202ENST00000552828 GRM4Q14833 912 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 CYB5R4Q7L1T6 521 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 GDPD5Q8WTR4 605 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 RUFY2Q8WXA3 655 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 INSL6Q9Y581 213 aa13.73□□□□□ -0.21
CKAP4-202ENST00000552828 FRMPD4Q14CM0 1322 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 RSPH10B2B2RC85 870 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 GCOM1H8Y6P7 765 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 RSPH10BP0C881 870 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 POLR2MP0CAP2 368 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 CHMLP26374 656 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 CCND2P30279 289 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 HTRA4P83105 476 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 TROAPQ12815 778 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 PLEKHG4Q58EX7 1191 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 BMP2KLQ5H9B9 411 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 SP7Q8TDD2 431 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 PIGSQ96S52 555 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 ARIH1Q9Y4X5 557 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 TRIP12Q14669 1992 aaPredicted RBP13.72□□□□□ -0.21
CKAP4-202ENST00000552828 PTPRSQ13332 1948 aa13.72□□□□□ -0.21
CKAP4-202ENST00000552828 PNMA6FA0A0J9YX94 578 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 H3BRB1 525 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 CYTH3O43739 400 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 CAND2O75155 1236 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 STAM2O75886 525 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 ICAM3P32942 547 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 PLA2G5P39877 138 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 THPOP40225 353 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.71□□□□□ -0.214e-12■■■■■ 28.4
CKAP4-202ENST00000552828 DBF4BQ8NFT6 615 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 GPKOWQ92917 476 aaPredicted RBP eCLIP13.71□□□□□ -0.21
CKAP4-202ENST00000552828 INPP4AQ96PE3 977 aaPredicted RBP13.71□□□□□ -0.21
CKAP4-202ENST00000552828 USP26Q9BXU7 913 aa13.71□□□□□ -0.21
CKAP4-202ENST00000552828 EPHX3Q9H6B9 360 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms