RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RAB11FIP3O75154 756 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 EFEMP2O95967 443 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 RNASE1P07998 156 aaKnown RBP6.79□□□□□ -1.32
LIMA1-205ENST00000550592 ERVFC1P60507 584 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 DSG1Q02413 1049 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 SPIRE1Q08AE8 756 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 KIR3DS1Q14943 382 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 ARHGAP44Q17R89 818 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 WWC2Q6AWC2 1192 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 OTOP1Q7RTM1 612 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 OTOP3Q7RTS5 596 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 NLRX1Q86UT6 975 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 LILRA2Q8N149 483 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 CHST14Q8NCH0 376 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 NUP43Q8NFH3 380 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 ATL2Q8NHH9 583 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 USP33Q8TEY7 942 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 SHISA4Q96DD7 197 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.79□□□□□ -1.32
LIMA1-205ENST00000550592 CTNND2Q9UQB3 1225 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 COA3Q9Y2R0 106 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-205ENST00000550592 PHLDB1Q86UU1 1377 aa6.79□□□□□ -1.32
LIMA1-205ENST00000550592 ALG1L2C9J202 215 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 ZNF561-AS1K7EIQ3 104 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 DGKIO75912 1065 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 GNAT1P11488 350 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 PDE6AP16499 860 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 CYP4F8P98187 520 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 GPR19Q15760 415 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 SKOR2Q2VWA4 1001 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-205ENST00000550592 TIGD5Q53EQ6 642 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 OSTM1Q86WC4 334 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 NXPE1Q8N323 547 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.78□□□□□ -1.32
LIMA1-205ENST00000550592 TTC1Q99614 292 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 C19orf44Q9H6X5 657 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 IFT22Q9H7X7 185 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 CRTAC1Q9NQ79 661 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 HOMER2Q9NSB8 354 aa6.78□□□□□ -1.32
LIMA1-205ENST00000550592 TCRBV5S4A2TA0A5A2 114 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 ZNF891A8MT65 544 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-205ENST00000550592 NEMP1O14524 444 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 AMY2AP04746 511 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 PDGFRBP09619 1106 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 RAC2P15153 192 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 PNLIPP16233 465 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 YBX3P16989 372 aaKnown RBP eCLIP6.77□□□□□ -1.33
LIMA1-205ENST00000550592 AMY2BP19961 511 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 EVA1CP58658 441 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 LRP8Q14114 963 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 STAT4Q14765 748 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 ZNF792Q3KQV3 632 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 RNF219Q5W0B1 726 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-205ENST00000550592 C2orf69Q8N8R5 385 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 SMC1BQ8NDV3 1235 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 WDR66Q8TBY9 1149 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 MYLIPQ8WY64 445 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 USP7Q93009 1102 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 SMURF1Q9HCE7 757 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 SLC6A20Q9NP91 592 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 ZKSCAN5Q9Y2L8 839 aa6.77□□□□□ -1.33
LIMA1-205ENST00000550592 PTPDC1A2A3K4 754 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 NKRFO15226 690 aaKnown RBP eCLIP6.76□□□□□ -1.33
LIMA1-205ENST00000550592 GPR39O43194 453 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 HYAL3O43820 417 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-205ENST00000550592 GAS7O60861 476 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 NTRK1P04629 796 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 GLI4P10075 376 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 COL6A2P12110 1019 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 TACR1P25103 407 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 TRHRP34981 398 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-205ENST00000550592 JAM2P57087 298 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 SART3Q15020 963 aaKnown RBP6.76□□□□□ -1.33
LIMA1-205ENST00000550592 HHIPL2Q6UWX4 724 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 ARHGAP36Q6ZRI8 547 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 FERMT3Q86UX7 667 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 CISD2Q8N5K1 135 aaKnown RBP6.76□□□□□ -1.33
LIMA1-205ENST00000550592 PIP4K2CQ8TBX8 421 aa6.76□□□□□ -1.33
LIMA1-205ENST00000550592 A0A1W2PQJ5 194 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 KRIT1O00522 736 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 TADA3O75528 432 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 FKBP9O95302 570 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 ZBTB48P10074 688 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-205ENST00000550592 ATP2A2P16615 1042 aaKnown RBP6.75□□□□□ -1.33
LIMA1-205ENST00000550592 ADCYAP1R1P41586 468 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 SLC6A11P48066 632 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 PLEKHG6Q3KR16 790 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 EMC4Q5J8M3 183 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 ZMYM1Q5SVZ6 1142 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 CYP4F22Q6NT55 531 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 LHFPL2Q6ZUX7 228 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 FKBP9P1Q75LS8 142 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 NECAB2Q7Z6G3 386 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 NETO2Q8NC67 525 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 UHMK1Q8TAS1 419 aaKnown RBP6.75□□□□□ -1.33
LIMA1-205ENST00000550592 SH3RF2Q8TEC5 729 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 GPR160Q9UJ42 338 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 WASHC2CQ9Y4E1 1318 aa6.75□□□□□ -1.33
LIMA1-205ENST00000550592 SLC12A8A0AV02 714 aa6.74□□□□□ -1.33
LIMA1-205ENST00000550592 SRGAP3O43295 1099 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms