RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 DEFB118Q96PH6 123 aa14.81□□□□□ -0.04
CCDC42-202ENST00000539522 UIMC1Q96RL1 719 aa14.81□□□□□ -0.04
CCDC42-202ENST00000539522 RNF208Q9H0X6 261 aa14.81□□□□□ -0.04
CCDC42-202ENST00000539522 ZDHHC9Q9Y397 364 aa14.81□□□□□ -0.04
CCDC42-202ENST00000539522 WDR81Q562E7 1941 aa14.81□□□□□ -0.04
CCDC42-202ENST00000539522 DHX15O43143 795 aaKnown RBP14.8□□□□□ -0.04
CCDC42-202ENST00000539522 GJB1P08034 283 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 PDIA4P13667 645 aaKnown RBP14.8□□□□□ -0.04
CCDC42-202ENST00000539522 AKR1A1P14550 325 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 UBA1P22314 1058 aaKnown RBP14.8□□□□□ -0.04
CCDC42-202ENST00000539522 CNGA1P29973 690 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 USP11P51784 963 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 TNFAIP2Q03169 654 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 RESTQ13127 1097 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 TRIM29Q14134 588 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 NBR1Q14596 966 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 DUSP28Q4G0W2 176 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 MCTP2Q6DN12 878 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 IQSEC1Q6DN90 963 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 NOSTRINQ8IVI9 506 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 TNS4Q8IZW8 715 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 UPF3AQ9H1J1 476 aaKnown RBP14.8□□□□□ -0.04
CCDC42-202ENST00000539522 KCNH7Q9NS40 1196 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 OGDHLQ9ULD0 1010 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 FAM184BQ9ULE4 1060 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 SYNRGQ9UMZ2 1314 aa14.8□□□□□ -0.04
CCDC42-202ENST00000539522 SORBS3O60504 671 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 STAM2O75886 525 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 SGPL1O95470 568 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 PGK1P00558 417 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 TXNP10599 105 aaKnown RBP14.79□□□□□ -0.04
CCDC42-202ENST00000539522 GJA8P48165 433 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 NUCB2P80303 420 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 KLHDC9Q8NEP7 349 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 U2AF1L4Q8WU68 220 aaKnown RBP14.79□□□□□ -0.04
CCDC42-202ENST00000539522 SCFD2Q8WU76 684 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 GPRASP2Q96D09 838 aa14.79□□□□□ -0.04
CCDC42-202ENST00000539522 AGO4Q9HCK5 861 aaKnown RBP14.79□□□□□ -0.04
CCDC42-202ENST00000539522 ALPK3Q96L96 1907 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 CCDC194A0A1B0GVG4 234 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 MSH4O15457 936 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 FIBPO43427 364 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 STX6O43752 255 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 DUSP11O75319 330 aaKnown RBP14.78□□□□□ -0.04
CCDC42-202ENST00000539522 EN2P19622 333 aaPredicted RBP14.78□□□□□ -0.04
CCDC42-202ENST00000539522 GJA9P57773 515 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 MTMR1Q13613 665 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 LETM2Q2VYF4 491 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 Q4G0T1 1027 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 MYSM1Q5VVJ2 828 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 FAM173BQ6P4H8 233 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 NIPA1Q7RTP0 329 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 UBE2Q1Q7Z7E8 422 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 NEK8Q86SG6 692 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 FERMT3Q86UX7 667 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 C4orf32Q8N8J7 132 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 ETNPPLQ8TBG4 499 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 HAS1Q92839 578 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 MRVI1Q9Y6F6 885 aa14.78□□□□□ -0.04
CCDC42-202ENST00000539522 KIAA0100Q14667 2235 aaKnown RBP14.78□□□□□ -0.04
CCDC42-202ENST00000539522 VPS37CA5D8V6 355 aaPredicted RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 B4DLN1 442 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 FARP2O94887 1054 aaPredicted RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 BEX3Q00994 111 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 LRRC41Q15345 812 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 HSDL1Q3SXM5 330 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 PRR16Q569H4 304 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 CELF3Q5SZQ8 465 aaKnown RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 PPP4R3AQ6IN85 833 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 MOXD1Q6UVY6 613 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 B3GNT9Q6UX72 402 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 TLK2Q86UE8 772 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 PLA2G4DQ86XP0 818 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 POTEDQ86YR6 584 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 DIS3LQ8TF46 1054 aaKnown RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 EMID1Q96A84 441 aaPredicted RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 MPHOSPH6Q99547 160 aaKnown RBP14.77□□□□□ -0.05
CCDC42-202ENST00000539522 TMEM60Q9H2L4 133 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 EHMT1Q9H9B1 1298 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 KCNMB3Q9NPA1 279 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 XPNPEP3Q9NQH7 507 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 PKD2L1Q9P0L9 805 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 KIF3AQ9Y496 699 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 PCDHB6Q9Y5E3 794 aa14.77□□□□□ -0.05
CCDC42-202ENST00000539522 TNRC18O15417 2968 aaPredicted RBP14.76□□□□□ -0.05
CCDC42-202ENST00000539522 H3BQV1 296 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 DYNC1LI2O43237 492 aaPredicted RBP14.76□□□□□ -0.05
CCDC42-202ENST00000539522 GGPS1O95749 300 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 CCNE2O96020 404 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 TGFB3P10600 412 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 TTLL4Q14679 1199 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 SAFBQ15424 915 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC42-202ENST00000539522 IFFO2Q5TF58 517 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 SLC5A5Q92911 643 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 CHAMP1Q96JM3 812 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 SENP7Q9BQF6 1050 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 FTOQ9C0B1 505 aaKnown RBP eCLIP14.76□□□□□ -0.05
CCDC42-202ENST00000539522 BRMS1Q9HCU9 246 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 Q9Y3F1 56 aa14.76□□□□□ -0.05
CCDC42-202ENST00000539522 A6NJR5 290 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms