RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 DNAH12Q6ZR08 3092 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 MYADML2A6NDP7 307 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 MEIS1O00470 390 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 NKRFO15226 690 aaKnown RBP eCLIP13.74□□□□□ -0.21
CHD4-203ENST00000535717 CTAGE5O15320 804 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 DYNC1LI2O43237 492 aaPredicted RBP13.74□□□□□ -0.21
CHD4-203ENST00000535717 FIBPO43427 364 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 TGFB3P10600 412 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 CAPN2P17655 700 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 ZNF76P36508 570 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 USP11P51784 963 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 GJA9P57773 515 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 NKX3-2P78367 333 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 MTMR1Q13613 665 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 LRRC41Q15345 812 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 SAFBQ15424 915 aaKnown RBP eCLIP13.74□□□□□ -0.21
CHD4-203ENST00000535717 INF2Q27J81 1249 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 PIK3AP1Q6ZUJ8 805 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 TLK2Q86UE8 772 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 NLRX1Q86UT6 975 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 ARRDC4Q8NCT1 418 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 AP5M1Q9H0R1 490 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 Q9Y3F1 56 aa13.74□□□□□ -0.21
CHD4-203ENST00000535717 MKI67P46013 3256 aaKnown RBP13.74□□□□□ -0.21
CHD4-203ENST00000535717 IGLV3-22A0A075B6J6 115 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 CAPN15O75808 1086 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 MYCNP04198 464 aaPredicted RBP13.73□□□□□ -0.21
CHD4-203ENST00000535717 C6orf222P0C671 652 aaPredicted RBP13.73□□□□□ -0.21
CHD4-203ENST00000535717 ARP10275 920 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 UBA1P22314 1058 aaKnown RBP13.73□□□□□ -0.21
CHD4-203ENST00000535717 CIITAP33076 1130 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 ARHGAP1Q07960 439 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 LARP1BQ659C4 914 aaKnown RBP13.73□□□□□ -0.21
CHD4-203ENST00000535717 NIPA1Q7RTP0 329 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 ANKLE1Q8NAG6 615 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 KLHDC9Q8NEP7 349 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 OR6J1Q8NGC5 347 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 FOXP1Q9H334 677 aaPredicted RBP13.73□□□□□ -0.21
CHD4-203ENST00000535717 BCAS3Q9H6U6 928 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 KCNH7Q9NS40 1196 aa13.73□□□□□ -0.21
CHD4-203ENST00000535717 CYP3A7-CYP3A51PA0A087WV96 503 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 KIF28PB7ZC32 967 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 DNM1LO00429 736 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 MAFGO15525 162 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 SORBS3O60504 671 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 ATP9AO75110 1047 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 GGPS1O95749 300 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 GH1P01241 217 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 KCNA2P16389 499 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 CYP3A7P24462 503 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 BEX3Q00994 111 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 FSCN1Q16658 493 aaKnown RBP13.72□□□□□ -0.21
CHD4-203ENST00000535717 GNASQ5JWF2 1037 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 CELF3Q5SZQ8 465 aaKnown RBP13.72□□□□□ -0.21
CHD4-203ENST00000535717 MYSM1Q5VVJ2 828 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 CCSAPQ6IQ19 270 aaPredicted RBP13.72□□□□□ -0.21
CHD4-203ENST00000535717 UBE2Q1Q7Z7E8 422 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 RNF180Q86T96 592 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 PLA2G4DQ86XP0 818 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 DIS3LQ8TF46 1054 aaKnown RBP13.72□□□□□ -0.21
CHD4-203ENST00000535717 EMID1Q96A84 441 aaPredicted RBP13.72□□□□□ -0.21
CHD4-203ENST00000535717 LENG9Q96B70 501 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 CDHR1Q96JP9 859 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 SENP7Q9BQF6 1050 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 SPC25Q9HBM1 224 aa13.72□□□□□ -0.21
CHD4-203ENST00000535717 A6NJR5 290 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 H3BQV1 296 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 FARP2O94887 1054 aaPredicted RBP13.71□□□□□ -0.21
CHD4-203ENST00000535717 TDP2O95551 362 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 U2AF2P26368 475 aaKnown RBP eCLIP13.71□□□□□ -0.21
CHD4-203ENST00000535717 CST5P28325 142 aaPredicted RBP13.71□□□□□ -0.21
CHD4-203ENST00000535717 LAMC2Q13753 1193 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 KCNA10Q16322 511 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 LETM2Q2VYF4 491 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 PRR16Q569H4 304 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 IFFO2Q5TF58 517 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 CYFIP1Q7L576 1253 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 NEK8Q86SG6 692 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 NOSTRINQ8IVI9 506 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 DHX37Q8IY37 1157 aaKnown RBP13.71□□□□□ -0.21
CHD4-203ENST00000535717 AFG1LQ8WV93 481 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 PAWRQ96IZ0 340 aaKnown RBP13.71□□□□□ -0.21
CHD4-203ENST00000535717 MBOAT7Q96N66 472 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 AGO4Q9HCK5 861 aaKnown RBP13.71□□□□□ -0.21
CHD4-203ENST00000535717 PKD2L1Q9P0L9 805 aa13.71□□□□□ -0.21
CHD4-203ENST00000535717 KBTBD13C9JR72 458 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 HSP90AA1P07900 732 aaKnown RBP13.7□□□□□ -0.22
CHD4-203ENST00000535717 COL6A1P12109 1028 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 PDCP20941 246 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 CPT1AP50416 773 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 SETQ01105 290 aaPredicted RBP13.7□□□□□ -0.22
CHD4-203ENST00000535717 ITGB3BPQ13352 177 aaPredicted RBP13.7□□□□□ -0.22
CHD4-203ENST00000535717 GNL2Q13823 731 aaKnown RBP13.7□□□□□ -0.22
CHD4-203ENST00000535717 NEDD9Q14511 834 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 Q4G0T1 1027 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 MCTP1Q6DN14 999 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 MOXD1Q6UVY6 613 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 SPRYD3Q8NCJ5 442 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 SPATA33Q96N06 139 aa13.7□□□□□ -0.22
CHD4-203ENST00000535717 UIMC1Q96RL1 719 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms