RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 MYL10Q9BUA6 226 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 SPZ1Q9BXG8 430 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 LSG1Q9H089 658 aaKnown RBP18.26■□□□□ 0.51
CPSF1-205ENST00000531042 TET1Q8NFU7 2136 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 SPTBN5Q9NRC6 3674 aaKnown RBP18.26■□□□□ 0.51
CPSF1-205ENST00000531042 TRANK1O15050 2925 aa18.26■□□□□ 0.51
CPSF1-205ENST00000531042 PRC1O43663 620 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 SORBS3O60504 671 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 DDAH1O94760 285 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 UBA1P22314 1058 aaKnown RBP18.25■□□□□ 0.51
CPSF1-205ENST00000531042 RBL2Q08999 1139 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 PPP2R2DQ66LE6 453 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 CASC1Q6TDU7 716 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 CTCFLQ8NI51 663 aaPredicted RBP18.25■□□□□ 0.51
CPSF1-205ENST00000531042 PHOSPHO2Q8TCD6 241 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 GPKOWQ92917 476 aaPredicted RBP eCLIP18.25■□□□□ 0.511e-6■□□□□ 10.4
CPSF1-205ENST00000531042 SLC9A7Q96T83 725 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 ESYT1Q9BSJ8 1104 aa18.25■□□□□ 0.51
CPSF1-205ENST00000531042 FRMPD4Q14CM0 1322 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 SELPP16109 830 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 SMARCA1P28370 1054 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 KIF5BP33176 963 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 MCM5P33992 734 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 MRPS9P82933 396 aaKnown RBP18.24■□□□□ 0.51
CPSF1-205ENST00000531042 GPNMBQ14956 572 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 LRRC8DQ7L1W4 858 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 TMTC2Q8N394 836 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 PPM1EQ8WY54 764 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 RRP36Q96EU6 259 aaKnown RBP18.24■□□□□ 0.51
CPSF1-205ENST00000531042 MLXIPQ9HAP2 919 aa18.24■□□□□ 0.51
CPSF1-205ENST00000531042 SH2B2O14492 632 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-205ENST00000531042 SLC27A2O14975 620 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 STAM2O75886 525 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 BAIAP3O94812 1187 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 PARNO95453 639 aaKnown RBP18.23■□□□□ 0.51
CPSF1-205ENST00000531042 CKBP12277 381 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 IGFBP4P22692 258 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 PTK7Q13308 1070 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 COL9A3Q14050 684 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-205ENST00000531042 NECTIN1Q15223 517 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 GNPTABQ3T906 1256 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 TMEM87BQ96K49 555 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 LZTS2Q9BRK4 669 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 REV3LO60673 3130 aa18.23■□□□□ 0.51
CPSF1-205ENST00000531042 CA3P07451 260 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 ICAM3P32942 547 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 GNAQP50148 359 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 CREB3L3Q68CJ9 461 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 NFXL1Q6ZNB6 911 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 HERC6Q8IVU3 1022 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 INPP4AQ96PE3 977 aaPredicted RBP18.22■□□□□ 0.51
CPSF1-205ENST00000531042 C16orf70Q9BSU1 422 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 BCAS3Q9H6U6 928 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 PRDM6Q9NQX0 595 aa18.22■□□□□ 0.51
CPSF1-205ENST00000531042 PTPRSQ13332 1948 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 CCDC69A6NI79 296 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 SPATA31C2B4DYI2 1134 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 NBNO60934 754 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 PLEKHA8P1O95397 391 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 CXCL10P02778 98 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 LIFRP42702 1097 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 ZNF200P98182 395 aaPredicted RBP18.21■□□□□ 0.51
CPSF1-205ENST00000531042 HIC1Q14526 733 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 TRIM71Q2Q1W2 868 aaKnown RBP18.21■□□□□ 0.51
CPSF1-205ENST00000531042 USP17L6PQ6QN14 398 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 SRBD1Q8N5C6 995 aaKnown RBP18.21■□□□□ 0.51
CPSF1-205ENST00000531042 SMARCC2Q8TAQ2 1214 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 CUL5Q93034 780 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 WNT8BQ93098 351 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 RTEL1Q9NZ71 1219 aa18.21■□□□□ 0.51
CPSF1-205ENST00000531042 SEC63Q9UGP8 760 aaKnown RBP18.21■□□□□ 0.51
CPSF1-205ENST00000531042 DOCK5Q9H7D0 1870 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 KIF28PB7ZC32 967 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 PIK3CDO00329 1044 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 MEIS2O14770 477 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 RXRAP19793 462 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 KCNJ6P48051 423 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 SEMA3FQ13275 785 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 NEDD9Q14511 834 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 CCDC85BQ15834 202 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-205ENST00000531042 CNKSR3Q6P9H4 555 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 TRAF7Q6Q0C0 670 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 SYMPKQ92797 1274 aaKnown RBP18.2■□□□□ 0.5
CPSF1-205ENST00000531042 ANO2Q9NQ90 1003 aa18.2■□□□□ 0.5
CPSF1-205ENST00000531042 H3BRB1 525 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 FIBPO43427 364 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 LGALS2P05162 132 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 CALM1P0DP23 149 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 CALM2P0DP24 149 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 CALM3P0DP25 149 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 WDR5P61964 334 aaKnown RBP18.19■□□□□ 0.5
CPSF1-205ENST00000531042 TJAP1Q5JTD0 557 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 ZNF618Q5T7W0 954 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 PCNX4Q63HM2 1172 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 XRRA1Q6P2D8 792 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 METTL7BQ6UX53 244 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 CYFIP1Q7L576 1253 aa18.19■□□□□ 0.5
CPSF1-205ENST00000531042 CMTR1Q8N1G2 835 aaKnown RBP18.19■□□□□ 0.5
CPSF1-205ENST00000531042 TUT1Q9H6E5 874 aaKnown RBP18.19■□□□□ 0.5
CPSF1-205ENST00000531042 NOP56O00567 594 aaKnown RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms