RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 DDX25Q9UHL0 483 aaKnown RBP21.55■■□□□ 1.04
PCF11-203ENST00000530304 FEZ2Q9UHY8 353 aaPredicted RBP21.55■■□□□ 1.04
PCF11-203ENST00000530304 DMGDHQ9UI17 866 aaKnown RBP21.55■■□□□ 1.04
PCF11-203ENST00000530304 MATR3P43243 847 aaKnown RBP eCLIP21.54■■□□□ 1.04
PCF11-203ENST00000530304 RASSF7Q02833 373 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 COASYQ13057 564 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 HGSNATQ68CP4 663 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 FOXR2Q6PJQ5 311 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 ADGRF4Q8IZF3 695 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 EDEM3Q9BZQ6 932 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 PNMA6FA0A0J9YX94 578 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 PPP1R11O60927 126 aaPredicted RBP21.54■■□□□ 1.04
PCF11-203ENST00000530304 FKBP3Q00688 224 aaKnown RBP21.54■■□□□ 1.04
PCF11-203ENST00000530304 GABPAQ06546 454 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 MAPK8IP2Q13387 824 aaPredicted RBP21.54■■□□□ 1.04
PCF11-203ENST00000530304 VPS72Q15906 364 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 DPP8Q6V1X1 898 aaPredicted RBP21.54■■□□□ 1.04
PCF11-203ENST00000530304 SRLQ86TD4 932 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 COL4A3BPQ9Y5P4 624 aa21.54■■□□□ 1.04
PCF11-203ENST00000530304 CLK2P49760 499 aaKnown RBP21.53■■□□□ 1.04
PCF11-203ENST00000530304 ZCWPW2Q504Y3 356 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 TBC1D22AQ8WUA7 517 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 TMEM51Q9NW97 253 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 SMARCAL1Q9NZC9 954 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 POLLQ9UGP5 575 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 SSU72P8A0A1W2PR75 194 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 MYO1CO00159 1063 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 TRAF5O00463 557 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 NCK2O43639 380 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 MRPS25P82663 173 aaKnown RBP21.53■■□□□ 1.04
PCF11-203ENST00000530304 CCDC181Q5TID7 509 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 MTMR8Q96EF0 704 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 TSPYL1Q9H0U9 437 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 NLRC4Q9NPP4 1024 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 PANK4Q9NVE7 773 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 EHD2Q9NZN4 543 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 DAGLAQ9Y4D2 1042 aa21.53■■□□□ 1.04
PCF11-203ENST00000530304 IGKV6D-41A0A0C4DH26 115 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 GOLGA6BA6NDN3 693 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 SLC1A4P43007 532 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 SLC7A5Q01650 507 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 CRY2Q49AN0 593 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 FAM196AQ6ZSG2 479 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.52■■□□□ 1.04
PCF11-203ENST00000530304 RRP15Q9Y3B9 282 aaKnown RBP21.52■■□□□ 1.04
PCF11-203ENST00000530304 NHSQ6T4R5 1651 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 BUB1O43683 1085 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 MARCH6O60337 910 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 ZNF543Q08ER8 600 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 TDRD12Q587J7 1177 aaKnown RBP21.52■■□□□ 1.04
PCF11-203ENST00000530304 TTBK2Q6IQ55 1244 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 PPP1R18Q6NYC8 613 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 RUBCNQ92622 972 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 C8orf37Q96NL8 207 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 TLR10Q9BXR5 811 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 PCDHA12Q9UN75 941 aa21.52■■□□□ 1.04
PCF11-203ENST00000530304 NOL4O94818 638 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 TTLL1O95922 423 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 SEPT2Q15019 361 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 CCDC40Q4G0X9 1142 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 KLHDC7AQ5VTJ3 777 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 SND1Q7KZF4 910 aaKnown RBP eCLIP21.51■■□□□ 1.03
PCF11-203ENST00000530304 TBC1D16Q8TBP0 767 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 CERKQ8TCT0 537 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 CUL5Q93034 780 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 NOX5Q96PH1 765 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 TBC1D7Q9P0N9 293 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 CEP72Q9P209 647 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 SLC9C1Q4G0N8 1177 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 FAM26FQ5R3K3 315 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 RNF10Q8N5U6 811 aaKnown RBP21.51■■□□□ 1.03
PCF11-203ENST00000530304 NGLY1Q96IV0 654 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 ZFP91Q96JP5 570 aaPredicted RBP21.51■■□□□ 1.03
PCF11-203ENST00000530304 FGFBP2Q9BYJ0 223 aa21.51■■□□□ 1.03
PCF11-203ENST00000530304 TAF1LQ8IZX4 1826 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 RBAK-RBAKDNI3L0D1 243 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 SSBP05455 408 aaKnown RBP eCLIP21.5■■□□□ 1.03
PCF11-203ENST00000530304 PAFAH1B1P43034 410 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 NAP1L1P55209 391 aaKnown RBP21.5■■□□□ 1.03
PCF11-203ENST00000530304 FAM83BQ5T0W9 1011 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 ARHGAP27Q6ZUM4 889 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 TRIM66O15016 1216 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 TLR2O60603 784 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 MRPL12P52815 198 aaKnown RBP21.5■■□□□ 1.03
PCF11-203ENST00000530304 SFMBT2Q5VUG0 894 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 BMP2KQ9NSY1 1161 aaPredicted RBP21.5■■□□□ 1.03
PCF11-203ENST00000530304 FOCADQ5VW36 1801 aa21.5■■□□□ 1.03
PCF11-203ENST00000530304 SLC16A2P36021 539 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 GTF2IP78347 998 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 HAUS3Q68CZ6 603 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 RBM17Q96I25 401 aaKnown RBP21.49■■□□□ 1.03
PCF11-203ENST00000530304 NUCKS1Q9H1E3 243 aaKnown RBP21.49■■□□□ 1.03
PCF11-203ENST00000530304 E9PMD0 336 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 SERPING1P05155 500 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 TMC4Q7Z404 712 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 C10orf67Q8IYJ2 551 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 SYN2Q92777 582 aaPredicted RBP21.49■■□□□ 1.03
PCF11-203ENST00000530304 UIMC1Q96RL1 719 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 PSTPIP2Q9H939 334 aa21.49■■□□□ 1.03
PCF11-203ENST00000530304 DDX4Q9NQI0 724 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 141 ms