RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MAD2L2Q9UI95 211 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 MTUS1Q9ULD2 1270 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 NOD1Q9Y239 953 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 MUC6Q6W4X9 2439 aa16.67■□□□□ 0.26
CPSF1-201ENST00000526271 EIF3JO75822 258 aaKnown RBP16.66■□□□□ 0.26
CPSF1-201ENST00000526271 CASTP20810 708 aaKnown RBP16.66■□□□□ 0.26
CPSF1-201ENST00000526271 HOXA13P31271 388 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-201ENST00000526271 PLA2G5P39877 138 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 PTK7Q13308 1070 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 DGKDQ16760 1214 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 STOX1Q6ZVD7 989 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 PPTC7Q8NI37 304 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 MAF1Q9H063 256 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 KAT14Q9H8E8 782 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 COG5Q9UP83 839 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 TRIOO75962 3097 aa16.66■□□□□ 0.26
CPSF1-201ENST00000526271 COL4A6Q14031 1691 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-201ENST00000526271 CYTH3O43739 400 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 LGR5O75473 907 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 CFBP00751 764 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 PARP1P09874 1014 aaKnown RBP16.65■□□□□ 0.26
CPSF1-201ENST00000526271 NUCB1Q02818 461 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 SEMA3FQ13275 785 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 ARHGEF16Q5VV41 709 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 FAM117BQ6P1L5 589 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 VSIG10LQ86VR7 867 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 CHD1LQ86WJ1 897 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 HLA-CQ95604 372 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 C17orf80Q9BSJ5 609 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 DSCC1Q9BVC3 393 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 TSPYL2Q9H2G4 693 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-201ENST00000526271 MRPL11Q9Y3B7 192 aaKnown RBP16.65■□□□□ 0.26
CPSF1-201ENST00000526271 MRVI1Q9Y6F6 885 aa16.65■□□□□ 0.26
CPSF1-201ENST00000526271 PALM3A6NDB9 673 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-201ENST00000526271 KIF28PB7ZC32 967 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 UBA1P22314 1058 aaKnown RBP16.64■□□□□ 0.25
CPSF1-201ENST00000526271 COL9A3Q14050 684 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-201ENST00000526271 PGM5Q15124 567 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 CELF3Q5SZQ8 465 aaKnown RBP16.64■□□□□ 0.25
CPSF1-201ENST00000526271 SERINC5Q86VE9 423 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 IQCA1Q86XH1 822 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 MCF2L2Q86YR7 1114 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 DBF4BQ8NFT6 615 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 MPHOSPH6Q99547 160 aaKnown RBP16.64■□□□□ 0.25
CPSF1-201ENST00000526271 RAD9AQ99638 391 aa16.64■□□□□ 0.25
CPSF1-201ENST00000526271 ABHD14A-ACY1A0A1B0GW23 586 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 GGPS1O95749 300 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 PDE4AP27815 886 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 KCNJ6P48051 423 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 MRPS9P82933 396 aaKnown RBP16.63■□□□□ 0.25
CPSF1-201ENST00000526271 HTRA4P83105 476 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-201ENST00000526271 LAMC2Q13753 1193 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 AAK1Q2M2I8 961 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 C7orf31Q8N865 590 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 IL27Q8NEV9 243 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-201ENST00000526271 SP7Q8TDD2 431 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-201ENST00000526271 PIEZO1Q92508 2521 aa16.63■□□□□ 0.25
CPSF1-201ENST00000526271 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 FAM86C2PA6NEL3 165 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 B4DLN1 442 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 LINC00271P0C7V0 271 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 MYCLP12524 364 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 GSPT1P15170 499 aaKnown RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 MRPL12P52815 198 aaKnown RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 PLEKHG4Q58EX7 1191 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 DHX37Q8IY37 1157 aaKnown RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 CCDC155Q8N6L0 562 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 TGS1Q96RS0 853 aaKnown RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 PIGSQ96S52 555 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 AMNQ9BXJ7 453 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 RIOX1Q9H6W3 641 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 LMCD1Q9NZU5 365 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 SUPT16HQ9Y5B9 1047 aaKnown RBP16.62■□□□□ 0.25
CPSF1-201ENST00000526271 FRMPD4Q14CM0 1322 aa16.62■□□□□ 0.25
CPSF1-201ENST00000526271 KLRF2D3W0D1 207 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 ZBTB5O15062 677 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 TREHO43280 583 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 PPFIA4O75335 1185 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 IL9P15248 144 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 C1QTNF1Q9BXJ1 281 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 UBE2ZQ9H832 354 aaPredicted RBP16.61■□□□□ 0.25
CPSF1-201ENST00000526271 WDFY4Q6ZS81 3184 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 RALGAPA2Q2PPJ7 1873 aa16.61■□□□□ 0.25
CPSF1-201ENST00000526271 DHX16O60231 1041 aaKnown RBP16.6■□□□□ 0.25
CPSF1-201ENST00000526271 LGALS2P05162 132 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 HOXD11P31277 338 aaPredicted RBP16.6■□□□□ 0.25
CPSF1-201ENST00000526271 ADAM17P78536 824 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 PTH1RQ03431 593 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 GRM4Q14833 912 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 CCDC178Q5BJE1 867 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 TRIM50Q86XT4 487 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 EXOC6Q8TAG9 804 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 SPATA33Q96N06 139 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 ZBED2Q9BTP6 218 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 RNPEPQ9H4A4 650 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 ZBTB47Q9UFB7 747 aaPredicted RBP16.6■□□□□ 0.25
CPSF1-201ENST00000526271 PCDHA1Q9Y5I3 950 aa16.6■□□□□ 0.25
CPSF1-201ENST00000526271 PARNO95453 639 aaKnown RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms