RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ZNF687Q8N1G0 1237 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 GIMAP8Q8ND71 665 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 U2AF1L4Q8WU68 220 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 SCFD2Q8WU76 684 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 KHSRPQ92945 711 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 PDCD2LQ9BRP1 358 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 VPS54Q9P1Q0 977 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 FAM184BQ9ULE4 1060 aa8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 NOL7Q9UMY1 257 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-222ENST00000515847 TNRC18O15417 2968 aaPredicted RBP8.83□□□□□ -1
LIMCH1-222ENST00000515847 MAFGO15525 162 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 SEPT4O43236 478 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 PPP1R37O75864 691 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 SGPL1O95470 568 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 MMP1P03956 469 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 NR3C2P08235 984 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 EIF2AK2P19525 551 aaKnown RBP8.83□□□□□ -1
LIMCH1-222ENST00000515847 EDNRBP24530 442 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 ZNF76P36508 570 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 GJA8P48165 433 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 ORC2Q13416 577 aaPredicted RBP8.83□□□□□ -1
LIMCH1-222ENST00000515847 CUL4AQ13619 759 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 ACVR2BQ13705 512 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 NONOQ15233 471 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-222ENST00000515847 PKN1Q16512 942 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 ANO1Q5XXA6 986 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 PCNX4Q63HM2 1172 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 TYW1BQ6NUM6 668 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 EEPD1Q7L9B9 569 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 MORC4Q8TE76 937 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 LENG1Q96BZ8 264 aaPredicted RBP8.83□□□□□ -1
LIMCH1-222ENST00000515847 TAAR1Q96RJ0 339 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 PHF20Q9BVI0 1012 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 ANO3Q9BYT9 981 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 KATNBL1Q9H079 304 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 DDX20Q9UHI6 824 aaKnown RBP8.83□□□□□ -1
LIMCH1-222ENST00000515847 DNAH12Q6ZR08 3092 aa8.83□□□□□ -1
LIMCH1-222ENST00000515847 MEIS2O14770 477 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 ADCY6O43306 1168 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 FIBPO43427 364 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 TFRCP02786 760 aaKnown RBP8.82□□□□□ -1
LIMCH1-222ENST00000515847 TGFB3P10600 412 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 SREBF1P36956 1147 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 PGM5Q15124 567 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 IQSEC1Q6DN90 963 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 USP17L6PQ6QN14 398 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 MOXD1Q6UVY6 613 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 NIPA1Q7RTP0 329 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 RNF180Q86T96 592 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 ANKLE1Q8NAG6 615 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 GPRASP2Q96D09 838 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 CRISPLD2Q9H0B8 497 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 AP5M1Q9H0R1 490 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 FOXP1Q9H334 677 aaPredicted RBP8.82□□□□□ -1
LIMCH1-222ENST00000515847 PCDHA6Q9UN73 950 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 Q9Y3F1 56 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 PCDHA8Q9Y5H6 950 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 MRVI1Q9Y6F6 885 aa8.82□□□□□ -1
LIMCH1-222ENST00000515847 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 KBTBD13C9JR72 458 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 JAK2O60674 1132 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 DTNBO60941 627 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 CTDNEP1O95476 244 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 MYCLP12524 364 aaPredicted RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 GJB2P29033 226 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 TRAPPC10P48553 1259 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 CLK2P49760 499 aaKnown RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 CPT1AP50416 773 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 USP11P51784 963 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 ARHGAP4P98171 946 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 MTMR1Q13613 665 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 NEDD9Q14511 834 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 UBE2SQ16763 222 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 CCDC144BQ3MJ40 725 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 VSIG10LQ86VR7 867 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 DIS3L2Q8IYB7 885 aaKnown RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 PCSK9Q8NBP7 692 aaKnown RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 ARRDC4Q8NCT1 418 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 IL31RAQ8NI17 732 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 TMC2Q8TDI7 906 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 DIS3LQ8TF46 1054 aaKnown RBP8.81□□□□□ -1
LIMCH1-222ENST00000515847 SDF4Q9BRK5 362 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 SEZ6LQ9BYH1 1024 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 PDGFCQ9NRA1 345 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 OGDHLQ9ULD0 1010 aa8.81□□□□□ -1
LIMCH1-222ENST00000515847 MARCH6O60337 910 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 KPNA6O60684 536 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 DUSP11O75319 330 aaKnown RBP8.8□□□□□ -1
LIMCH1-222ENST00000515847 FARP2O94887 1054 aaPredicted RBP8.8□□□□□ -1
LIMCH1-222ENST00000515847 BMP15O95972 392 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 GH1P01241 217 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 CYP3A4P08684 503 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 PTGS1P23219 599 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 ADCYAP1R1P41586 468 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 TNFAIP2Q03169 654 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 ST3GAL1Q11201 340 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 CEP55Q53EZ4 464 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 JAKMIP3Q5VZ66 844 aa8.8□□□□□ -1
LIMCH1-222ENST00000515847 LARP1BQ659C4 914 aaKnown RBP8.8□□□□□ -1
LIMCH1-222ENST00000515847 KRT40Q6A162 431 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms